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Report for CCDS53872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53872.1 Public Homo sapiens 13 TDRD3 24 110 108 CCDS HistoryNCBI Gene:81550Re-query CCDS DB by CCDS ID:53872.1Re-query CCDS DB by GeneID:81550See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53872.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377881.8 ENSP00000367113.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377881.8Link to Ensembl Protein Viewer:ENSP00000367113.2Re-query CCDS DB by Nucleotide ID:ENST00000377881Re-query CCDS DB by Protein ID:ENSP00000367113
Original member Current member NCBI NM_001146070.2 NP_001139542.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146070.2Link to Protein Sequence:NP_001139542.1Re-query CCDS DB by Nucleotide ID:NM_001146070Re-query CCDS DB by Protein ID:NP_001139542Link to BLAST:NP_001139542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139542.1 744 Q9H7E2-3 744 100% 0 0

Chromosomal Locations for CCDS 53872.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 60397365 60397405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60439688 60439772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60444683 60444748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60460380 60460540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60467238 60467379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60483775 60483846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60485799 60485948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60494435 60494575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60509763 60509919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60510630 60510755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60528367 60529217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60535108 60535233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 60567525 60567641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGGCCCAGGTGGCCGGCGCGGCGTTGTCCCAGGCGGGTTGGTATCTTTCAGATGAAGGCATTGAAGCTT
GCACAAGCTCTCCAGACAAAGTCAATGTAAATGACATCATCCTGATTGCTCTCAATACAGATCTGAGAAC
AATTGGCAAGAAATTCCTCCCCAGTGACATCAATAGTGGAAAGGTAGAAAAGCTCGAAGGTCCATGTGTT
TTGCAAATTCAAAAAATTCGCAATGTTGCTGCACCAAAGGATAATGAAGAATCTCAGGCTGCACCAAGGA
TGCTGCGATTACAGATGACTGATGGTCATATAAGTTGCACAGCAGTAGAATTTAGTTATATGTCAAAAAT
AAGCCTGAACACACCACCTGGAACTAAAGTTAAGCTCTCAGGCATTGTTGACATAAAAAATGGATTCCTG
CTCTTGAATGACTCTAACACCACAGTTCTTGGTGGTGAAGTGGAACACCTTATTGAGAAATGGGAGTTAC
AGAGAAGCTTATCAAAACACAATAGAAGCAATATTGGAACTGAAGGTGGACCACCGCCTTTTGTGCCTTT
TGGACAGAAGTGTGTATCTCATGTCCAAGTGGATAGCAGAGAACTTGATCGAAGAAAAACATTGCAAGTT
ACAATGCCTGTCAAACCTACAAATGATAATGATGAATTTGAAAAGCAAAGGACGGCTGCTATTGCTGAAG
TTGCAAAGAGCAAGGAAACCAAGACATTTGGAGGAGGTGGTGGTGGTGCTAGAAGTAATCTCAATATGAA
TGCTGCTGGTAACCGAAATAGGGAAGTTTTACAGAAAGAAAAGTCAACCAAATCAGAGGGAAAACATGAA
GGTGTCTATAGAGAACTGGTTGATGAGAAAGCTCTGAAGCACATAACGGAAATGGGCTTCAGTAAGGAAG
CATCGAGGCAAGCTCTTATGGATAATGGCAACAACTTAGAAGCAGCACTGAACGTACTTCTTACAAGCAA
TAAACAGAAACCTGTTATGGGTCCTCCTCTGAGAGGTAGAGGAAAAGGCAGGGGGCGAATAAGATCTGAA
GATGAAGAGGACCTGGGAAATGCAAGGCCATCAGCACCAAGCACATTATTTGATTTCTTGGAATCTAAAA
TGGGAACTTTGAATGTGGAAGAACCTAAATCACAGCCACAGCAGCTTCATCAGGGACAATACAGATCATC
AAATACTGAGCAAAATGGAGTAAAAGATAATAATCATCTGAGACATCCTCCTCGAAATGATACCAGGCAG
CCAAGAAATGAAAAACCGCCTCGTTTTCAAAGAGACTCCCAAAATTCAAAGTCAGTTTTAGAAGGCAGTG
GATTACCTAGAAATAGAGGTTCTGAAAGACCAAGTACTTCTTCAGTATCTGAAGTATGGGCTGAAGACAG
AATCAAATGTGATAGACCGTATTCTAGATATGACAGAACTAAAGATACTTCATATCCTTTAGGTTCTCAG
CATAGTGATGGTGCTTTTAAAAAAAGAGATAACTCTATGCAAAGCAGATCAGGAAAAGGTCCCTCCTTTG
CAGAGGCAAAAGAAAATCCACTTCCTCAAGGATCTGTAGATTATAATAATCAAAAACGTGGAAAAAGAGA
AAGCCAAACATCTATTCCTGATTATTTTTATGACAGGAAATCACAAACAATAAATAATGAAGCTTTCAGT
GGTATAAAAATTGAAAAACATTTTAATGTAAATACTGATTATCAGAATCCAGTTCGAAGTAATAGTTTCA
TTGGTGTTCCAAATGGAGAAGTAGAAATGCCACTGAAAGGAAGACGAATAGGACCTATTAAGCCAGCAGG
ACCTGTCACAGCTGTACCCTGTGATGATAAAATATTTTACAATAGTGGGCCCAAACGAAGATCTGGGCCA
ATTAAGCCAGAAAAAATACTAGAATCATCTATTCCTATGGAGTATGCAAAAATGTGGAAACCTGGAGATG
AATGTTTTGCACTTTATTGGGAAGACAACAAGTTTTACCGGGCAGAAGTTGAAGCCCTCCATTCTTCGGG
TATGACAGCAGTTGTTAAATTCATTGACTACGGAAACTATGAAGAGGTGCTACTGAGCAATATCAAGCCC
ATTCAAACAGAGGCATGGGAGGAAGAAGGCACCTACGATCAAACTCTGGAGTTCCGTAGGGGAGGTGATG
GCCAGCCAAGACGATCCACTCGGCCAACCCAACAGTTTTACCAACCACCCCGGGCTCGGAACTAA

Translation (744 aa):
MAQVAGAALSQAGWYLSDEGIEACTSSPDKVNVNDIILIALNTDLRTIGKKFLPSDINSGKVEKLEGPCV
LQIQKIRNVAAPKDNEESQAAPRMLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFL
LLNDSNTTVLGGEVEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQV
TMPVKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKSTKSEGKHE
GVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGRGKGRGRIRSE
DEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQ
PRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQ
HSDGAFKKRDNSMQSRSGKGPSFAEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFS
GIKIEKHFNVNTDYQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGP
IKPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKP
IQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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