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Report for CCDS53891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53891.1 Public Homo sapiens 14 NPAS3 24 110 108 CCDS HistoryNCBI Gene:64067Re-query CCDS DB by CCDS ID:53891.1Re-query CCDS DB by GeneID:64067See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53891.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356141.9 ENSP00000348460.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356141.9Link to Ensembl Protein Viewer:ENSP00000348460.4Re-query CCDS DB by Nucleotide ID:ENST00000356141Re-query CCDS DB by Protein ID:ENSP00000348460
Original member Current member NCBI NM_001164749.2 NP_001158221.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164749.2Link to Protein Sequence:NP_001158221.1Re-query CCDS DB by Nucleotide ID:NM_001164749Re-query CCDS DB by Protein ID:NP_001158221Link to BLAST:NP_001158221.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158221.1 933 Q8IXF0-1 933 100% 0 0

Chromosomal Locations for CCDS 53891.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 32939317 32939366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33055905 33055994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33215182 33215426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33367186 33367268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33560121 33560210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33676211 33676385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33735214 33735332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33774337 33774530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33778466 33778572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33793897 33794044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33797457 33797581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33799734 33801109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2802 nt):
ATGGCGCCCACCAAGCCCAGCTTTCAGCAGGATCCTTCCAGGCGAGAACGAATAACTGCCCAGCATCCTC
TGCCCAACCAATCAGAATGTAGGAAAATCTACAGATATGACGGAATCTACTGTGAATCTACCTACCAGAA
TTTACAAGCATTGAGAAAGGAGAAATCCCGAGATGCTGCTCGCTCCCGCCGGGGAAAAGAAAACTTTGAG
TTCTATGAATTGGCCAAGTTGTTGCCTCTTCCTGCAGCCATTACCAGCCAGCTCGACAAGGCATCCATCA
TTCGACTTACAATTAGCTATCTGAAAATGAGGGACTTTGCTAACCAGGGGGACCCTCCGTGGAACTTGCG
AATGGAAGGCCCTCCACCTAACACATCAGTAAAAGTTATAGGTGCACAGCGAAGGAGAAGCCCCAGTGCA
CTAGCCATTGAAGTATTTGAAGCACATTTGGGAAGCCACATTTTGCAGTCCCTGGATGGCTTTGTATTTG
CACTAAATCAGGAAGGAAAATTTTTGTACATTTCCGAAACAGTCTCCATCTACCTAGGCCTCTCACAAGT
GGAGCTGACAGGCAGCAGTGTCTTTGACTATGTCCACCCCGGAGATCACGTGGAGATGGCTGAGCAGCTG
GGCATGAAGCTCCCCCCTGGGCGGGGTCTCCTGTCACAGGGCACTGCTGAGGACGGAGCCAGCTCAGCAT
CTTCCTCCTCTCAGTCGGAGACCCCCGAGCCAGTGGAGTCAACCAGCCCCAGTCTGCTAACCACTGACAA
CACTCTTGAGCGTTCCTTTTTCATCCGAATGAAATCTACTCTGACCAAACGCGGTGTGCACATCAAATCA
TCAGGATATAAGGTGATTCACATAACAGGCCGGCTACGCCTGAGAGTGTCGCTGTCCCACGGGAGGACCG
TCCCCAGCCAAATCATGGGTCTCGTGGTTGTTGCGCATGCCTTGCCTCCCCCTACGATCAATGAAGTCAG
AATTGACTGCCATATGTTCGTCACTCGAGTAAATATGGACCTCAATATCATTTACTGTGAAAATAGGATT
AGTGATTATATGGATCTGACCCCTGTAGATATCGTAGGGAAGAGATGCTACCACTTCATCCATGCTGAAG
ACGTGGAGGGCATCAGGCACAGTCACTTGGACTTGCTGAATAAGGGTCAGTGTGTGACAAAGTACTATCG
CTGGATGCAGAAGAACGGAGGATATATTTGGATACAGTCCAGTGCCACCATAGCTATTAATGCCAAGAAT
GCAAATGAAAAGAATATCATCTGGGTGAATTACCTTCTTAGCAATCCTGAGTACAAGGACACACCCATGG
ACATCGCACAGCTCCCCCATCTGCCGGAGAAAACTTCCGAATCCTCGGAGACATCCGACTCTGAGTCAGA
CTCTAAAGACACCTCAGGTATTACAGAGGACAACGAGAACTCCAAGTCCGACGAGAAGGGGAACCAGTCC
GAGAACAGCGAAGACCCGGAGCCCGACCGGAAGAAGTCGGGCAACGCGTGTGACAACGACATGAACTGCA
ACGACGACGGCCACAGCTCCAGTAACCCGGACAGCCGCGACAGCGACGACAGCTTCGAGCACTCGGACTT
TGAGAACCCCAAGGCGGGCGAGGACGGCTTCGGTGCTCTGGGCGCGATGCAGATCAAGGTGGAGCGCTAC
GTGGAGAGCGAGTCGGACCTGCGGCTGCAGAACTGCGAGTCACTCACGTCCGACAGCGCCAAGGACTCGG
ACAGCGCAGGCGAGGCGGGCGCGCAGGCCTCCAGCAAGCACCAGAAGCGCAAGAAAAGGCGGAAACGGCA
AAAGGGCGGCAGCGCCAGCCGCCGGCGCCTGTCCAGCGCGTCGAGCCCAGGCGGCCTGGACGCGGGCCTG
GTGGAGCCCCCGCGGCTGCTGTCCTCCCCCAACAGTGCCTCGGTGCTCAAGATCAAGACGGAGATCTCAG
AACCCATCAATTTCGACAATGACAGCAGCATCTGGAACTACCCGCCCAACCGGGAGATCTCCAGGAACGA
GTCCCCCTACAGCATGACCAAGCCCCCCAGCTCTGAGCACTTCCCGTCCCCGCAGGGCGGCGGCGGTGGG
GGTGGCGGTGGCGGGGGGCTGCACGTGGCCATTCCCGACTCGGTCCTCACCCCGCCCGGCGCCGACGGCG
CGGCCGCCCGCAAGACTCAGTTCGGCGCCTCGGCCACCGCGGCCCTGGCCCCCGTCGCCTCCGACCCGCT
GTCACCCCCGCTCTCGGCGTCCCCGCGGGACAAGCACCCCGGGAACGGCGGCGGGGGCGGGGGCGGGGGC
GGCGGCGCGGGGGGCGGCGGCCCCAGCGCGTCCAACTCCTTGCTGTACACTGGGGACCTGGAGGCGCTGC
AGAGGTTGCAGGCGGGCAACGTCGTGCTCCCGCTGGTGCACAGGGTGACCGGGACCCTGGCCGCCACCAG
CACGGCCGCGCAGAGGGTCTACACCACGGGCACCATCCGCTACGCGCCCGCCGAGGTGACCCTGGCCATG
CAGAGCAACCTGCTGCCCAACGCGCACGCTGTTAACTTCGTGGACGTTAACAGCCCCGGCTTTGGCCTCG
ACCCCAAGACGCCCATGGAGATGCTCTACCACCACGTGCACCGGCTCAACATGTCAGGACCGTTCGGCGG
CGCAGTGAGCGCAGCTAGCCTGACGCAGATGCCCGCCGGCAACGTGTTCACCACGGCCGAGGGACTCTTC
TCCACGCTGCCCTTCCCCGTCTACAGCAACGGCATCCACGCGGCACAGACTCTGGAGCGCAAGGAGGACT
GA

Translation (933 aa):
MAPTKPSFQQDPSRRERITAQHPLPNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGKENFE
FYELAKLLPLPAAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKVIGAQRRRSPSA
LAIEVFEAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQL
GMKLPPGRGLLSQGTAEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKS
SGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRI
SDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKN
ANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLPEKTSESSETSDSESDSKDTSGITEDNENSKSDEKGNQS
ENSEDPEPDRKKSGNACDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFENPKAGEDGFGALGAMQIKVERY
VESESDLRLQNCESLTSDSAKDSDSAGEAGAQASSKHQKRKKRRKRQKGGSASRRRLSSASSPGGLDAGL
VEPPRLLSSPNSASVLKIKTEISEPINFDNDSSIWNYPPNREISRNESPYSMTKPPSSEHFPSPQGGGGG
GGGGGGLHVAIPDSVLTPPGADGAAARKTQFGASATAALAPVASDPLSPPLSASPRDKHPGNGGGGGGGG
GGAGGGGPSASNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAM
QSNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGGAVSAASLTQMPAGNVFTTAEGLF
STLPFPVYSNGIHAAQTLERKED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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