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Report for CCDS53905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53905.1 Public Homo sapiens 14 VIPAS39 24 110 108 CCDS HistoryNCBI Gene:63894Re-query CCDS DB by CCDS ID:53905.1Re-query CCDS DB by GeneID:63894See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53905.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327028.8 ENSP00000313098.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000327028.8Link to Ensembl Protein Viewer:ENSP00000313098.5Re-query CCDS DB by Nucleotide ID:ENST00000327028Re-query CCDS DB by Protein ID:ENSP00000313098
Original member Current member EBI ENST00000448935.6 ENSP00000404815.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448935.6Link to Ensembl Protein Viewer:ENSP00000404815.2Re-query CCDS DB by Nucleotide ID:ENST00000448935Re-query CCDS DB by Protein ID:ENSP00000404815
Original member Current member NCBI NM_001193316.2 NP_001180245.1 Accepted alive Link to Nucleotide Sequence:NM_001193316.2Link to Protein Sequence:NP_001180245.1Re-query CCDS DB by Nucleotide ID:NM_001193316Re-query CCDS DB by Protein ID:NP_001180245Link to BLAST:NP_001180245.1
Original member Current member NCBI NM_001400324.1 NP_001387253.1 Accepted alive Link to Nucleotide Sequence:NM_001400324.1Link to Protein Sequence:NP_001387253.1Re-query CCDS DB by Nucleotide ID:NM_001400324Re-query CCDS DB by Protein ID:NP_001387253Link to BLAST:NP_001387253.1
Original member Current member NCBI NM_001400325.1 NP_001387254.1 Accepted alive Link to Nucleotide Sequence:NM_001400325.1Link to Protein Sequence:NP_001387254.1Re-query CCDS DB by Nucleotide ID:NM_001400325Re-query CCDS DB by Protein ID:NP_001387254Link to BLAST:NP_001387254.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180245.1 444 Q9H9C1-2 444 100% 0 0
NP_001387253.1 444 Q9H9C1-2 444 100% 0 0
NP_001387254.1 444 Q9H9C1-2 444 100% 0 0

Chromosomal Locations for CCDS 53905.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 77427616 77427636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77428370 77428474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77429006 77429095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77429681 77429767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77433842 77433931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77434262 77434303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77435259 77435393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77435844 77435919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77437808 77437881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77441066 77441093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77442560 77442662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77443119 77443152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77444249 77444341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77448494 77448550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77449293 77449357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77449714 77449752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77453299 77453401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77454010 77454102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGAATCGGACAAAGGGTGATGAGGAGGAGTATTGGAACAGCTCCAAGTTCAAGGCTTTTACCTTTGACG
ATGAAGACGATGAGCTTTCACAGTTAAAGGAGTCCAAGCGGGCGGTGAACAGCCTCCGAGACTTCGTGGA
TGATGATGACGATGATGACCTGGAGCGAGTCAGCTGGAGTGGGGAACCTGTGGGAAGTAGAACTAGACCT
GGAAGTTTCCAGTCCCTTTCTGATGCTCTGTCAGACACACCTGCCAAAAGCTATGCTCCAGAGCTGGGGA
GACCCAAAGGGGAGTATAGGGATTACAGCAATGACTGGAGCCCCAGTGATACAGTGCGACGTCTCCGGAA
GGGCAAGGTTTGCTCACTAGAGAGATTCCGCTCCTTACAGGACAAACTACAACTCCTAGAAGAGGCAGTA
AGCATGCATGATGGAAACGTCATTACTGCAGTTCTGATTTTCCTGAAGAGGACACTGAGCAAAGAGATCC
TCTTCCGAGAGCTGGAGGTGCGACAGGTTGCCCTGAGACATCTTATTCACTTCCTTAAGGAAATAGGGGA
TCAAAAGTTGCTTTTAGACCTCTTCAGGTTCCTAGATAGAACAGAAGAGCTTGCGCTATCTCATTATCGA
GAGCATTTGAACATTCAGGACCCTGACAAACGAAAAGAATTTCTTAAAACCTGTGTTGGTTTGCCATTTT
CAGCAGAAGATTCCGCACACATACAGGACCATTACACGCTCCTGGAACGTCAGATCATTATTGAGGCAAA
TGATCGCCATCTAGAATCAGCAGGACAGACTGAGATCTTCCGAAAGCACCCCCGCAAAGCCTCCATCCTC
AACATGCCACTAGTGACAACACTTTTCTACTCCTGCTTCTATCACTACACAGAGGCTGAGGGGACATTCA
GCAGTCCCGTCAACCTGAAGAAGACATTTAAGATCCCAGATAAACAGTATGTGCTGACAGCCCTGGCTGC
TCGTGCCAAGCTTCGAGCCTGGAATGATGTAGATGCCCTATTCACCACAAAGAACTGGCTGGGCTATACC
AAGAAGAGAGCACCCATTGGCTTCCATCGGGTTGTCGAAATTTTGCACAAGAACAATGCCCCTGTGCAGA
TATTACAGGAGTATGTCAATCTGGTGGAAGATGTGGACACGAAGTTGAACTTAGCCACTAAGTTCAAGTG
CCATGATGTCGTCATTGATACCTACCGGGACCTGAAGGATCGTCAACAGTTGCTAGCATACAGGAGTAAG
GTAGATAAAGGATCAGCAGAGGAGGAGAAGATTGATGCTCTTCTCAGCAGCTCGCAAATTCGATGGAAGA
ATTAA

Translation (444 aa):
MNRTKGDEEEYWNSSKFKAFTFDDEDDELSQLKESKRAVNSLRDFVDDDDDDDLERVSWSGEPVGSRTRP
GSFQSLSDALSDTPAKSYAPELGRPKGEYRDYSNDWSPSDTVRRLRKGKVCSLERFRSLQDKLQLLEEAV
SMHDGNVITAVLIFLKRTLSKEILFRELEVRQVALRHLIHFLKEIGDQKLLLDLFRFLDRTEELALSHYR
EHLNIQDPDKRKEFLKTCVGLPFSAEDSAHIQDHYTLLERQIIIEANDRHLESAGQTEIFRKHPRKASIL
NMPLVTTLFYSCFYHYTEAEGTFSSPVNLKKTFKIPDKQYVLTALAARAKLRAWNDVDALFTTKNWLGYT
KKRAPIGFHRVVEILHKNNAPVQILQEYVNLVEDVDTKLNLATKFKCHDVVIDTYRDLKDRQQLLAYRSK
VDKGSAEEEKIDALLSSSQIRWKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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