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Report for CCDS53947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53947.1 Public Homo sapiens 15 SCG3 24 110 108 CCDS HistoryNCBI Gene:29106Re-query CCDS DB by CCDS ID:53947.1Re-query CCDS DB by GeneID:29106See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53947.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542355.6 ENSP00000445205.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542355.6Link to Ensembl Protein Viewer:ENSP00000445205.2Re-query CCDS DB by Nucleotide ID:ENST00000542355Re-query CCDS DB by Protein ID:ENSP00000445205
Original member Current member NCBI NM_001165257.2 NP_001158729.1 Accepted alive Link to Nucleotide Sequence:NM_001165257.2Link to Protein Sequence:NP_001158729.1Re-query CCDS DB by Nucleotide ID:NM_001165257Re-query CCDS DB by Protein ID:NP_001158729Link to BLAST:NP_001158729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158729.1 236 Q8WXD2-2 236 100% 0 0

Chromosomal Locations for CCDS 53947.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 51692165 51692336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51695875 51695991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51699319 51699402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51701107 51701244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51713333 51713413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51719408 51719526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCAGCAATTCAAGATGGTCTTGCTAAGGGAGAAAACGATGAAACAGTATCTAACACATTAACCTTGA
CA
AATGGCTTGGAAAGGAGAACTAAAACCTACAGTGAAGACAACTTTGAGGAACTCCAATATTTCCCAAA
T
TTCTATGCGCTACTGAAAAGTATTGATTCAGAAAAAGAAGCAAAAGAGAAAGAAACACTGATTACTATC
ATG
AAAACACTGATTGACTTTGTGAAGATGATGGTGAAATATGGAACAATATCTCCAGAAGAAGGTGTTT
CC
TACCTTGAAAACTTGGATGAAATGATTGCTCTTCAGACCAAAAACAAGCTAGAAAAAAATGCTACTGA
C
AATATAAGCAAGCTTTTCCCAGCACCATCAGAGAAGAGTCATGAAGAAACAGACAGTACCAAGGAAGAA
GCA
GCTAAGATGGAAAAGGAATATGGAAGCTTGAAGGATTCCACAAAAGATGATAACTCCAACCCAGGAG
GA
AAGACAGATGAACCCAAAGGAAAAACAGAAGCCTATTTGGAAGCCATCAGAAAAAATATTGAATGGTT
G
AAGAAACATGACAAAAAGGGAAATAAAGAAGATTATGACCTTTCAAAGATGAGAGACTTCATCAATAAA
CAA
GCTGATGCTTATGTGGAGAAAGGCATCCTTGACAAGGAAGAAGCCGAGGCCATCAAGCGCATTTATA
GC
AGCCTGTAA


Translation (236 aa):
MAAIQDGLAKGENDETVSNTLTLTNGLERRTKTYSEDNFEELQYFPNFYALLKSIDSEKEAKEKETLITI
M
KTLIDFVKMMVKYGTISPEEGVSYL
ENLDEMIALQTKNKLEKNATDNISKLFPAPSEKSHEETDSTKEE
A
AKMEKEYGSLKDSTKDDNSNPGGKTDEPK
GKTEAYLEAIRKNIEWLKKHDKKGNKEDYDLSKMRDFINK
Q
ADAYVEKGILDKEEAEAIKRIYSSL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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