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Report for CCDS54.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54.1 Public Homo sapiens 1 AJAP1 24 110 108 CCDS HistoryNCBI Gene:55966Re-query CCDS DB by CCDS ID:54.1Re-query CCDS DB by GeneID:55966See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 54.1
This CCDS ID represents the protein described in PMIDs: 14595118 and 17267690. This protein is encoded by two different splice variants that are supported by AF175409.1 and AL049673.1. It should be noted that this transcript is predicted to undergo nonsense-mediated mRNA decay (NMD). However, the protein is represented because it was detected endogenously in PMID: 14595118. It is likely that the majority of transcripts representing this variant will undergo NMD, while some low level of NMD escape may allow for the expression of this protein.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 54.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378190.7 ENSP00000367432.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378190.7Link to Ensembl Protein Viewer:ENSP00000367432.3Re-query CCDS DB by Nucleotide ID:ENST00000378190Re-query CCDS DB by Protein ID:ENSP00000367432
Original member Current member EBI ENST00000378191.5 ENSP00000367433.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378191.5Link to Ensembl Protein Viewer:ENSP00000367433.3Re-query CCDS DB by Nucleotide ID:ENST00000378191Re-query CCDS DB by Protein ID:ENSP00000367433
Original member Current member NCBI NM_001042478.2 NP_001035943.1 Accepted alive Link to Nucleotide Sequence:NM_001042478.2Link to Protein Sequence:NP_001035943.1Re-query CCDS DB by Nucleotide ID:NM_001042478Re-query CCDS DB by Protein ID:NP_001035943Link to BLAST:NP_001035943.1
Original member Current member NCBI NM_018836.4 NP_061324.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018836.4Link to Protein Sequence:NP_061324.1Re-query CCDS DB by Nucleotide ID:NM_018836Re-query CCDS DB by Protein ID:NP_061324Link to BLAST:NP_061324.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035943.1 411 Q9UKB5 411 100% 0 0
NP_061324.1 411 Q9UKB5 411 100% 0 0

Chromosomal Locations for CCDS 54.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 4655426 4655454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 4711900 4712699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 4769853 4769940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 4772280 4772525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 4774427 4774499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGTGGATTCAACAGCTTTTAGGACTCAGCTCCATGTCCATCCGCTGGCCGGGCCGCCCCCTCGGAAGCC
ATGCCTGGATACTGATAGCCATGTTTCAGCTCGCCGTGGACCTGCCCGCCTGTGAGGCCCTGGGCCCGGG
GCCGGAGTTCTGGCTCCTGCCGCGGTCGCCGCCCCGGCCGCCCCGGCTGTGGAGTTTTAGGAGTGGACAG
CCAGCGCGGGTCCCGGCCCCGGTGTGGAGCCCCCGGCCGCCCCGAGTGGAGCGGATCCACGGGCAGATGC
AGATGCCTCGAGCCAGACGGGCCCACAGGCCCCGGGACCAGGCGGCCGCCCTCGTGCCCAAGGCAGGACT
GGCCAAGCCCCCAGCTGCTGCCAAATCCAGCCCTTCCCTCGCCTCTTCGTCCTCGTCCTCGTCCTCCGCG
GTGGCCGGTGGGGCCCCGGAGCAGCAGGCCCTCCTGAGGAGGGGCAAGAGGCACCTGCAGGGGGACGGTC
TCAGCAGCTTCGACTCCAGAGGCAGCCGGCCCACCACAGAGACTGAGTTCATCGCCTGGGGGCCCACGGG
GGACGAGGAGGCCCTGGAGTCCAACACATTTCCGGGCGTTTACGGCCCCACCACGGTCTCCATCCTACAA
ACACGGAAGACAACTGTGGCCGCCACCACCACCACCACCACCACGGCCACCCCCATGACGCTGCAGACTA
AGGGGTTCACCGAGTCCTTGGATCCCCGGAGAAGGATCCCAGGTGGGGTTAGCACAACGGAGCCTTCCAC
CAGTCCCAGCAACAACGGGGAAGTCACCCAGCCCCCAAGGATTCTGGGGGAGGCCTCAGGTCTGGCTGTC
CATCAGATCATCACCATCACCGTCTCCCTCATCATGGTCATAGCTGCTCTCATCACAACTCTTGTCTTAA
AAAATTGCTGTGCCCAAAGCGGGAACACTCGTCGGAACAGCCACCAGCGGAAGACCAACCAGCAGGAGGA
GAGCTGCCAGAACCTCACGGACTTCCCCTCGGCCCGGGTGCCCAGCAGCCTGGACATATTCACGGCCTAT
AACGAGACCCTGCAGTGTTCTCACGAGTGCGTCAGGGCATCTGTGCCCGTGTACACCGATGAGACGCTGC
ACTCGACGACGGGGGAGTACAAATCCACATTTAATGGAAACCGACCCTCCTCTTCTGATCGGCATCTTAT
TCCTGTGGCCTTCGTGTCTGAGAAATGGTTTGAAATCTCCTGCTGA

Translation (411 aa):
MWIQQLLGLSSMSIRWPGRPLGSHAWILIAMFQLAVDLPACEALGPGPEFWLLPRSPPRPPRLWSFRSGQ
PARVPAPVWSPRPPRVERIHGQMQMPRARRAHRPRDQAAALVPKAGLAKPPAAAKSSPSLASSSSSSSSA
VAGGAPEQQALLRRGKRHLQGDGLSSFDSRGSRPTTETEFIAWGPTGDEEALESNTFPGVYGPTTVSILQ
TRKTTVAATTTTTTTATPMTLQTKGFTESLDPRRRIPGGVSTTEPSTSPSNNGEVTQPPRILGEASGLAV
HQIITITVSLIMVIAALITTLVLKNCCAQSGNTRRNSHQRKTNQQEESCQNLTDFPSARVPSSLDIFTAY
NETLQCSHECVRASVPVYTDETLHSTTGEYKSTFNGNRPSSSDRHLIPVAFVSEKWFEISC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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