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Report for CCDS54052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54052.1 Public Homo sapiens 16 BANP 24 110 108 CCDS HistoryNCBI Gene:54971Re-query CCDS DB by CCDS ID:54052.1Re-query CCDS DB by GeneID:54971See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54052.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538234.5 ENSP00000444352.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538234.5Link to Ensembl Protein Viewer:ENSP00000444352.1Re-query CCDS DB by Nucleotide ID:ENST00000538234Re-query CCDS DB by Protein ID:ENSP00000444352
Original member Current member NCBI NM_001173542.1 NP_001167013.1 Accepted alive Link to Nucleotide Sequence:NM_001173542.1Link to Protein Sequence:NP_001167013.1Re-query CCDS DB by Nucleotide ID:NM_001173542Re-query CCDS DB by Protein ID:NP_001167013Link to BLAST:NP_001167013.1
Original member Current member NCBI NM_001384925.1 NP_001371854.1 Accepted alive Link to Nucleotide Sequence:NM_001384925.1Link to Protein Sequence:NP_001371854.1Re-query CCDS DB by Nucleotide ID:NM_001384925Re-query CCDS DB by Protein ID:NP_001371854Link to BLAST:NP_001371854.1
Original member Current member NCBI NM_001384926.1 NP_001371855.1 Accepted alive Link to Nucleotide Sequence:NM_001384926.1Link to Protein Sequence:NP_001371855.1Re-query CCDS DB by Nucleotide ID:NM_001384926Re-query CCDS DB by Protein ID:NP_001371855Link to BLAST:NP_001371855.1
Original member Current member NCBI NM_001384927.1 NP_001371856.1 Accepted alive Link to Nucleotide Sequence:NM_001384927.1Link to Protein Sequence:NP_001371856.1Re-query CCDS DB by Nucleotide ID:NM_001384927Re-query CCDS DB by Protein ID:NP_001371856Link to BLAST:NP_001371856.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001167013.1 508 Q8N9N5-7 508 100% 0 0
NP_001371854.1 508 Q8N9N5-7 508 100% 0 0
NP_001371855.1 508 Q8N9N5-7 508 100% 0 0
NP_001371856.1 508 Q8N9N5-7 508 100% 0 0

Chromosomal Locations for CCDS 54052.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 87975116 87975185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87981036 87981127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87984060 87984259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88004295 88004411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88006090 88006265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88018428 88018667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88027483 88027650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88033109 88033245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88035323 88035394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88037973 88038011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88072069 88072212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88076590 88076661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGATGTCGGAACACGACCTGGCCGATGTGGTTCAGATTGCAGTGGAAGACCTGAGCCCTGACCACCCAG
TT
GTTTTGGAGAATCATGTAGTGACAGATGAAGACGAACCTGCTTTGAAACGCCAGCGACTAGAAATCAA
T
TGCCAGGATCCATCTATAAAGTCATTCCTGTATTCCATCAACCAGACAATCTGCTTGCGGTTGGATAGC
ATT
GAAGCCAAATTGCAAGCCCTGGAGGCTACTTGTAAATCCTTAGAAGAAAAGCTGGATCTGGTCACGA
AC
AAGCAGCACAGCCCCATCCAGGTCCCCATGGTGGCCGGCTCCCCTCTCGGGGCAACCCAGACGTGCAA
C
AAAGTGCGATGCGTCGTCCCCCAGACTACAGTAATACTCAACAATGATCGGCAGAACGCCATTGTAGCC
AAG
ATGGAAGACCCCTTGAGCAACAGGGCACCGGATTCCCTGGAAAATGTCATTAGCAACGCTGTGCCTG
GG
CGTCGGCAGAACACCATTGTGGTGAAGGTGCCGGGCCAAGAAGACAGCCACCACGAGGACGGGGAGAG
C
GGCTCGGAGGCCAGCGACTCTGTGTCCAGCTGTGGGCAGGCGGGCAGTCAGAGCATCGGGAGCAACGTC
ACG
CTCATCACCCTGAACTCGGAAGAGGACTACCCCAATGGCACCTGGCTGGGCGACGAGAACAACCCCG
AG
ATGCGGGTACGCTGCGCCATCATCCCCTCCGACATGCTGCACATCAGCACCAACTGCCGCACGGCCGA
G
AAGATGGCGCTCACGCTGCTGGACTACCTCTTCCACCGCGAGGTGCAGGCTGTGTCCAACCTCTCGGGG
CAG
GGCAAGCACGGGAAGAAGCAGCTGGACCCGCTCACCATCTACGGCATCCGGTGTCACCTTTTCTATA
AA
TTTGGCATCACAGAATCCGACTGGTACCGAATCAAGCAGAGCATCGACTCCAAGTGCCGCACGGCGTG
G
CGGCGCAAGCAGCGGGGCCAGAGCCTGGCGGTCAAGAGCTTCTCGCGGAGAACGCCCAACTCGTCCTCC
TAC
TGCCCTTCAGAGCCGATGATGAGCACCCCACCTCCTGCCAGCGAGCTCCCGCAGCCACAGCCGCAGC
CG
CAGGCCCTGCACTACGCGCTGGCCAACGCACAGCAGGTGCAGATCCACCAGATCGGAGAAGACGGACA
G
GTGCAAGTAATCCCACAGGGACACCTCCACATCGCCCAGGTGCCGCAGGGGGAGCAAGTCCAGATCACG
CAG
GACAGCGAGGGCAACCTCCAGATCCATCACGTGGGGCAGGACGGTCAGGTGCTGCAGGGTGCACAGC
TG
ATCGCCGTGGCCTCCTCGGACCCCGCGGCGGCGGGCGTGGATGGGTCGCCACTCCAGGGCAGCGACAT
C
CAGGTTCAGTACGTGCAGCTGGCGCCAGTGAGTGACCACACGGCCGGGGCACAGACGGCCGAAGCCCTG
CAG
CCCACGCTACAGCCGGAGATGCAGCTCGAGCACGGGGCCATCCAGATTCAGTGA


Translation (508 aa):
MMSEHDLADVVQIAVEDLSPDHPVVLENHVVTDEDEPALKRQRLEINCQDPSIKSFLYSINQTICLRLDS
I
EAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVR
CVVPQTTVILNNDRQNAIVA
K
MEDPLSNRAPDSLENVIS
NAVPGRRQNTIVVKVPGQEDSHHEDGESGSEASDSVSSCGQAGSQSIGSNV
T
LITLNSE
EDYPNGTWLGDENNPEMRVRCAIIPSDMLHISTNCRTAEKMALTLLDYLFHREVQAVSNLSG
Q
GKHGKKQLDPLTIYGIR
CHLFYKFGITESDWYRIKQSIDSKCRTAWRRKQRGQSLAVKSFSRRTPNSSS
Y
CPS
EPMMSTPPPASELPQPQPQPQALHYALANAQQVQIHQIGEDGQVQVIPQGHLHIAQVPQGEQVQIT
Q
DSE
GNLQIHHVGQDGQVLQGAQLIAVASSDPAAAGVDGSPLQGSDIQVQYVQLAPVSDHTAGAQTAEAL
Q
PTLQPEMQLEHGAIQIQ




Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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