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Report for CCDS54254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54254.1 Public Homo sapiens 19 ARHGAP33 24 110 108 CCDS HistoryNCBI Gene:115703Re-query CCDS DB by CCDS ID:54254.1Re-query CCDS DB by GeneID:115703See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378944.9 ENSP00000368227.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378944.9Link to Ensembl Protein Viewer:ENSP00000368227.5Re-query CCDS DB by Nucleotide ID:ENST00000378944Re-query CCDS DB by Protein ID:ENSP00000368227
Original member Current member NCBI NM_001172630.2 NP_001166101.1 Accepted alive Link to Nucleotide Sequence:NM_001172630.2Link to Protein Sequence:NP_001166101.1Re-query CCDS DB by Nucleotide ID:NM_001172630Re-query CCDS DB by Protein ID:NP_001166101Link to BLAST:NP_001166101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166101.1 1123 O14559-10 1123 100% 0 0

Chromosomal Locations for CCDS 54254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35779032 35779124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35780211 35780333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35780421 35780498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35780582 35780648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35780757 35780816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35780920 35781072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35781150 35781252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35782373 35782517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35782597 35782679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35782762 35782869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35784172 35784317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35784953 35785106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35785189 35785334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35785409 35785483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35786413 35787072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35787168 35787559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35787644 35788429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3372 nt):
ATGCTGGTGCCACTGCTGCTGCAGTACCTGGAGACACTGTCAGGACTGGTGGACAGTAACCTCAACTGCG
GGCCTGTGCTCACCTGGATGGAGCTGGACAATCACGGCCGGCGACTGCTCCTCAGTGAGGAGGCGTCACT
CAATATCCCTGCAGTGGCGGCCGCCCATGTGATCAAACGGTATACAGCCCAGGCGCCAGATGAGCTGTCC
TTTGAGGTGGGAGACATTGTCTCGGTGATCGACATGCCACCCACAGAGGATCGGAGCTGGTGGCGGGGCA
AGCGAGGCTTCCAGGTCGGGTTCTTCCCCAGTGAGTGTGTGGAACTCTTCACAGAGCGGCCAGGTCCGGG
CCTGAAGGCGGATGCCGATGGCCCCCCATGTGGCATCCCGGCTCCCCAGGGTATCTCGTCTCTGACCTCA
GCTGTGCCACGGCCTCGTGGGAAGCTGGCCGGCCTGCTCCGCACCTTCATGCGCTCCCGCCCTTCTCGGC
AGCGGCTGCGGCAGCGGGGAATCCTGCGACAGAGGGTGTTTGGCTGCGATCTTGGCGAGCACCTCAGCAA
CTCAGGCCAGGATGTGCCCCAGGTGCTGCGCTGCTGCTCCGAGTTCATTGAGGCCCACGGGGTGGTGGAT
GGGATCTACCGGCTCTCAGGCGTGTCTTCCAACATCCAGAGGCTTCGGCACGAGTTTGACAGTGAGAGGA
TCCCGGAGCTGTCTGGCCCTGCATTCCTGCAGGACATCCACAGCGTGTCCTCCCTCTGCAAGCTCTACTT
CCGAGAGCTTCCGAACCCTCTGCTCACCTACCAGCTCTATGGGAAGTTCAGTGAGGCCATGTCAGTGCCT
GGGGAGGAGGAGCGTCTGGTGCGGGTGCACGATGTCATCCAGCAGCTGCCCCCACCACATTACAGGACCC
TGGAGTACCTGCTGAGGCACCTGGCCCGCATGGCGAGACACAGTGCCAACACCAGCATGCATGCCCGCAA
CCTGGCCATTGTCTGGGCACCCAACCTGCTACGGTCCATGGAGCTGGAGTCAGTGGGAATGGGTGGCGCG
GCGGCGTTCCGGGAAGTTCGGGTGCAGTCGGTGGTGGTGGAGTTTCTGCTCACCCATGTGGACGTCCTGT
TCAGCGACACCTTCACCTCCGCCGGCCTCGACCCTGCAGGCCGCTGCCTGCTCCCCAGGCCCAAGTCCCT
TGCGGGCAGCTGCCCCTCCACCCGCCTGCTGACGCTGGAGGAAGCCCAGGCACGCACCCAGGGCCGGCTG
GGGACGCCCACGGAGCCCACAACTCCCAAGGCCCCGGCCTCACCTGCGGAAAGGAGGAAAGGGGAGAGAG
GGGAGAAGCAGCGGAAGCCAGGGGGCAGCAGCTGGAAGACGTTCTTTGCACTGGGCCGGGGCCCCAGTGT
CCCTCGAAAGAAGCCCCTGCCCTGGCTGGGGGGCACCCGTGCCCCACCGCAGCCTTCAGGCAGCAGACCC
GACACCGTCACACTGAGATCTGCCAAGAGCGAGGAGTCTCTGTCATCGCAGGCCAGCGGGGCTGGCCTCC
AGAGGCTGCACAGGCTGCGGCGACCCCACTCCAGCAGCGACGCTTTCCCTGTGGGCCCAGCACCTGCTGG
CTCCTGCGAGAGCCTGTCCTCGTCCTCCTCCTCCGAGTCCTCCTCCTCTGAGTCCTCCTCTTCCTCCTCT
GAGTCCTCAGCAGCTGGGCTGGGGGCACTCTCTGGGTCTCCCTCACACCGTACCTCAGCCTGGCTAGATG
ATGGTGATGAGCTGGACTTCAGCCCACCCCGCTGCCTGGAGGGACTCCGGGGGCTGGACTTTGATCCCTT
AACCTTCCGCTGCAGCAGCCCCACCCCAGGGGATCCCGCACCTCCCGCCAGCCCAGCACCCCCCGCCCCT
GCCTCTGCCTTCCCACCCAGGGTGACCCCCCAGGCCATCTCGCCCCGGGGGCCCACCAGCCCCGCCTCGC
CTGCTGCCCTAGACATCTCAGAGCCCCTGGCTGTATCAGTGCCACCCGCTGTCCTAGAACTGCTGGGGGC
TGGGGGAGCACCTGCCTCAGCCACCCCAACACCAGCTCTCAGCCCCGGCCGGAGCCTGCGCCCCCATCTC
ATACCCCTGCTGCTGCGAGGAGCCGAGGCCCCGCTGACTGACGCCTGCCAGCAGGAGATGTGCAGCAAGC
TCCGGGGAGCCCAGGGCCCACTCGGTCCTGATATGGAGTCACCACTGCCACCCCCTCCCCTGTCTCTCCT
GCGCCCTGGGGGTGCCCCACCCCCGCCCCCTAAGAACCCAGCACGCCTCATGGCCCTGGCCCTGGCTGAG
CGGGCTCAGCAGGTGGCCGAGCAACAGAGCCAGCAGGAGTGTGGGGGCACCCCACCTGCTTCCCAATCCC
CCTTCCACCGCTCGCTGTCTCTGGAGGTGGGCGGGGAGCCCCTGGGGACCTCAGGGAGTGGGCCACCTCC
CAACTCCCTAGCACACCCGGGTGCCTGGGTCCCGGGACCCCCACCCTACTTACCAAGGCAACAAAGTGAT
GGGAGCCTGCTGAGGAGCCAGCGGCCCATGGGGACCTCAAGGAGGGGACTCCGAGGCCCTGCCCAGGTTC
CTACCCCCGGCTTCTTCTCCCCAGCCCCCAGGGAGTGCCTGCCACCCTTCCTCGGGGTCCCCAAGCCAGG
CTTGTACCCCCTGGGCCCCCCATCCTTCCAGCCCAGTTCCCCAGCCCCAGTCTGGAGGAGCTCTCTGGGC
CCCCCTGCACCACTCGACAGGGGAGAGAACCTGTACTATGAGATCGGGGCAAGTGAGGGGTCCCCCTATT
CTGGCCCCACCCGCTCCTGGAGTCCCTTTCGCTCCATGCCCCCCGACAGGCTCAATGCCTCCTACGGCAT
GCTTGGCCAATCACCCCCACTCCACAGGTCCCCCGACTTCCTGCTCAGCTACCCGCCAGCCCCCTCCTGC
TTTCCCCCTGACCACCTTGGCTACTCAGCCCCCCAGCACCCTGCTCGGCGCCCTACACCGCCTGAGCCCC
TCTACGTCAACCTAGCTCTAGGGCCCAGGGGTCCCTCACCTGCCTCTTCCTCCTCCTCTTCCCCTCCTGC
CCACCCCCGAAGCCGTTCAGATCCCGGTCCCCCAGTCCCCCGCCTTCCCCAGAAACAACGGGCACCCTGG
GGACCCCGTACCCCTCATAGGGTGCCGGGTCCCTGGGGCCCTCCTGAGCCTCTCCTGCTCTACAGGGCAG
CCCCGCCAGCCTACGGAAGGGGGGGCGAGCTCCACCGAGGGTCCTTGTACAGAAATGGAGGGCAAAGAGG
GGAGGGGGCTGGTCCCCCACCCCCTTACCCCACTCCCAGCTGGTCCCTCCACTCTGAGGGCCAGACCCGA
AGCTACTGCTGA

Translation (1123 aa):
MLVPLLLQYLETLSGLVDSNLNCGPVLTWMELDNHGRRLLLSEEASLNIPAVAAAHVIKRYTAQAPDELS
FEVGDIVSVIDMPPTEDRSWWRGKRGFQVGFFPSECVELFTERPGPGLKADADGPPCGIPAPQGISSLTS
AVPRPRGKLAGLLRTFMRSRPSRQRLRQRGILRQRVFGCDLGEHLSNSGQDVPQVLRCCSEFIEAHGVVD
GIYRLSGVSSNIQRLRHEFDSERIPELSGPAFLQDIHSVSSLCKLYFRELPNPLLTYQLYGKFSEAMSVP
GEEERLVRVHDVIQQLPPPHYRTLEYLLRHLARMARHSANTSMHARNLAIVWAPNLLRSMELESVGMGGA
AAFREVRVQSVVVEFLLTHVDVLFSDTFTSAGLDPAGRCLLPRPKSLAGSCPSTRLLTLEEAQARTQGRL
GTPTEPTTPKAPASPAERRKGERGEKQRKPGGSSWKTFFALGRGPSVPRKKPLPWLGGTRAPPQPSGSRP
DTVTLRSAKSEESLSSQASGAGLQRLHRLRRPHSSSDAFPVGPAPAGSCESLSSSSSSESSSSESSSSSS
ESSAAGLGALSGSPSHRTSAWLDDGDELDFSPPRCLEGLRGLDFDPLTFRCSSPTPGDPAPPASPAPPAP
ASAFPPRVTPQAISPRGPTSPASPAALDISEPLAVSVPPAVLELLGAGGAPASATPTPALSPGRSLRPHL
IPLLLRGAEAPLTDACQQEMCSKLRGAQGPLGPDMESPLPPPPLSLLRPGGAPPPPPKNPARLMALALAE
RAQQVAEQQSQQECGGTPPASQSPFHRSLSLEVGGEPLGTSGSGPPPNSLAHPGAWVPGPPPYLPRQQSD
GSLLRSQRPMGTSRRGLRGPAQVPTPGFFSPAPRECLPPFLGVPKPGLYPLGPPSFQPSSPAPVWRSSLG
PPAPLDRGENLYYEIGASEGSPYSGPTRSWSPFRSMPPDRLNASYGMLGQSPPLHRSPDFLLSYPPAPSC
FPPDHLGYSAPQHPARRPTPPEPLYVNLALGPRGPSPASSSSSSPPAHPRSRSDPGPPVPRLPQKQRAPW
GPRTPHRVPGPWGPPEPLLLYRAAPPAYGRGGELHRGSLYRNGGQRGEGAGPPPPYPTPSWSLHSEGQTR
SYC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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