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Report for CCDS5426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5426.1 Public Homo sapiens 7 ZNRF2 24 110 108 CCDS HistoryNCBI Gene:223082Re-query CCDS DB by CCDS ID:5426.1Re-query CCDS DB by GeneID:223082See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5426.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323037.5 ENSP00000323879.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323037.5Link to Ensembl Protein Viewer:ENSP00000323879.4Re-query CCDS DB by Nucleotide ID:ENST00000323037Re-query CCDS DB by Protein ID:ENSP00000323879
Original member Current member NCBI NM_147128.4 NP_667339.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_147128.4Link to Protein Sequence:NP_667339.1Re-query CCDS DB by Nucleotide ID:NM_147128Re-query CCDS DB by Protein ID:NP_667339Link to BLAST:NP_667339.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_667339.1 242 Q8NHG8 242 100% 0 0

Chromosomal Locations for CCDS 5426.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30285358 30285826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30323642 30323737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30355728 30355833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30362377 30362434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGGCGCCAAACAGAGCGGCCCGGCCGCCGCTAACGGCCGCACGCGCGCGTACTCGGGCTCGGATCTAC
CTTCCAGTAGCAGCGGAGGCGCCAATGGGACCGCGGGCGGCGGCGGGGGCGCTCGGGCCGCCGCCGCGGG
GAGGTTCCCGGCTCAGGTGCCCAGCGCGCACCAGCCCAGCGCCTCCGGCGGCGCCGCGGCGGCCGCGGCG
GCCCCGGCAGCCCCGGCGGCCCCGCGCAGCCGCTCCCTCGGCGGGGCCGTGGGGAGCGTGGCGTCGGGGG
CCCGCGCGGCGCAGTCCCCCTTCAGCATCCCGAACAGCAGCAGCGGCCCGTACGGCTCGCAGGACTCGGT
GCACAGCAGCCCTGAGGACGGCGGCGGCGGCCGGGACCGGCCGGTGGGCGGGAGCCCCGGCGGGCCGCGC
CTGGTGATCGGCTCCTTACCAGCTCACCTCTCGCCGCACATGTTTGGAGGATTTAAGTGCCCTGTATGCT
CAAAATTTGTATCCTCAGATGAAATGGATTTGCATCTTGTAATGTGTTTAACAAAGCCACGAATAACCTA
TAATGAGGATGTACTGAGTAAAGATGCTGGGGAATGTGCAATATGCCTTGAAGAATTGCAGCAGGGAGAT
ACTATAGCACGACTGCCTTGTCTATGCATATATCATAAAGGCTGCATAGATGAATGGTTTGAAGTAAATA
GATCTTGCCCTGAGCACCCTTCAGATTAA

Translation (242 aa):
MGAKQSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGGAAAAAA
APAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVHSSPEDGGGGRDRPVGGSPGGPR
LVIGSLPAHLSPHMFGGFKCPVCSKFVSSDEMDLHLVMCLTKPRITYNEDVLSKDAGECAICLEELQQGD
TIARLPCLCIYHKGCIDEWFEVNRSCPEHPSD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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