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Report for CCDS54497.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
54497.2 |
Public |
Homo sapiens |
22 |
CLTCL1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:8218](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:54497.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:8218](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 22 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 54497.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000621271.4 |
ENSP00000485020.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000621271.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000485020.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000621271](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000485020](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001835.4 |
NP_001826.3 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001835.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001826.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001835](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001826](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001826.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001826.3 |
1583 |
P53675-2 |
1583 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 54497.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4752 nt): ATGGCGCAGATCCTCCCTGTTCGCTTTCAGGAGCACTTCCAGCTCCAAAACCTTGGAATTAATCCAGCTA ACATTGGATTCAGCACACTGACCATGGAATCTGACAAGTTCATATGTATCCGAGAGAAAGTTGGTGAGCA GGCACAGGTCACGATCATTGACATGAGTGACCCAATGGCTCCGATCCGACGGCCTATCTCTGCAGAGAGT GCCATCATGAATCCAGCCTCTAAGGTGATAGCTCTGAAAGCTGGGAAGACACTTCAGATCTTTAATATTG AGATGAAGAGTAAAATGAAGGCTCATACTATGGCAGAAGAAGTGATTTTCTGGAAATGGGTTTCTGTGAA CACTGTTGCCTTGGTGACCGAGACCGCGGTCTACCACTGGAGCATGGAAGGTGACTCCCAGCCCATGAAG ATGTTTGATAGACATACCAGTCTGGTGGGCTGCCAGGTGATTCACTACCGGACTGATGAGTACCAGAAGT GGCTGCTGCTCGTAGGCATCTCGGCTCAGCAAAACCGTGTGGTTGGAGCAATGCAGCTCTACTCTGTGGA TAGGAAGGTTTCACAACCCATAGAAGGCCATGCTGCGGCTTTTGCAGAGTTCAAGATGGAGGGGAATGCC AAGCCTGCCACCCTTTTCTGCTTTGCTGTACGTAATCCCACAGGAGGCAAGTTGCACATCATTGAAGTTG GACAGCCTGCAGCGGGAAACCAACCTTTTGTAAAGAAAGCAGTAGATGTGTTTTTTCCTCCAGAGGCACA GAATGATTTTCCAGTGGCTATGCAGATTGGAGCTAAACATGGTGTTATTTACTTGATCACAAAGTATGGC TATCTTCATCTGTACGACCTAGAGTCTGGCGTGTGCATCTGCATGAACCGTATTAGTGCTGACACAATAT TTGTCACTGCTCCACACAAACCAACCTCTGGAATTATTGGTGTCAACAAAAAGGGACAGGTACTGTCAGT TTGTGTTGAGGAAGATAACATTGTGAATTATGCAACCAACGTGCTTCAGAATCCAGACCTTGGTCTGCGT TTGGCCGTTCGTAGTAACCTGGCTGGGGCAGAGAAGTTGTTTGTGAGAAAATTCAATACCCTCTTTGCAC AGGGCAGCTATGCTGAAGCCGCCAAAGTTGCAGCGTCTGCACCAAAGGGAATCCTGCGTACCAGAGAGAC GGTCCAGAAATTCCAGAGTATACCCGCTCAGTCTGGCCAGGCTTCTCCATTGCTGCAGTACTTCGGAATC CTGCTCGACCAGGGTCAGCTCAATAAACTTGAATCCTTAGAACTTTGCCATCTGGTTCTTCAGCAGGGGC GTAAGCAACTCCTAGAGAAGTGGCTGAAAGAAGATAAGCTGGAGTGCTCAGAGGAGCTCGGAGACTTGGT CAAAACCACTGACCCCATGCTCGCTCTGAGTGTGTACCTTCGGGCAAATGTGCCAAGCAAAGTGATCCAG TGTTTTGCAGAAACAGGCCAATTCCAGAAAATTGTGCTCTATGCCAAAAAGGTTGGGTACACCCCAGACT GGATCTTTCTGCTGAGGGGTGTAATGAAGATCAGTCCGGAACAGGGCCTGCAGTTTTCTCGAATGCTAGT GCAGGACGAGGAGCCGCTGGCCAACATTAGCCAGATTGTGGACATTTTCATGGAAAACAGTTTAATTCAG CAGTGTACTTCCTTCTTATTGGATGCCTTGAAGAATAATCGCCCAGCTGAGGGACTCCTGCAGACATGGC TGTTGGAGATGAACCTTGTTCATGCACCCCAGGTTGCAGATGCCATCCTTGGAAATAAAATGTTTACTCA TTACGACCGGGCCCACATTGCCCAGCTCTGTGAGAAGGCAGGCCTCCTGCAGCAAGCACTGGAGCACTAC ACCGACCTCTATGACATCAAGAGGGCTGTGGTCCACACTCACCTCCTCAATCCCGAGTGGCTTGTCAATT TCTTTGGCTCCTTATCGGTGGAGGATTCTGTGGAGTGTCTGCATGCCATGCTGTCTGCTAACATCAGACA GAACCTTCAGCTGTGTGTGCAGGTGGCCTCTAAGTACCACGAGCAGCTGGGCACGCAGGCCCTGGTGGAG CTCTTTGAATCCTTCAAGAGTTACAAAGGCCTCTTCTACTTCCTGGGCTCAATCGTGAACTTCAGCCAAG ACCCAGATGTGCATCTGAAATACATTCAGGCTGCCTGTAAGACAGGGCAGATCAAGGAGGTGGAGAGGAT ATGCCGAGAGAGCAGCTGCTACAACCCAGAGCGTGTGAAGAACTTCCTGAAGGAGGCCAAGCTCACAGAC CAGCTTCCCCTCATCATCGTGTGTGATCGTTTTGGCTTTGTCCATGACCTTGTCCTATATTTATACCGCA ACAACCTGCAGAGGTACATTGAGATCTACGTGCAGAAGGTCAACCCTAGCCGGACCCCAGCTGTGATTGG AGGGCTGCTTGATGTGGATTGTTCTGAGGAAGTGATTAAACACTTAATCATGGCAGTGAGAGGACAGTTC TCTACTGATGAGTTGGTGGCTGAAGTAGAAAAAAGAAATAGGCTCAAGCTGCTGCTTCCCTGGCTGGAGT CCCAGATTCAGGAAGGCTGTGAGGAGCCTGCCACTCACAATGCACTGGCTAAAATCTACATCGACAGCAA CAACAGCCCCGAGTGCTTCCTGAGAGAGAATGCCTACTATGACAGCAGCGTGGTGGGCCGCTACTGTGAG AAGCGAGACCCCCATCTGGCCTGTGTTGCCTATGAGCGGGGGCAGTGTGACCTTGAGCTCATCAAGGTGT GCAATGAGAATTCTCTGTTCAAAAGCGAGGCCCGCTACCTGGTATGCAGAAAGGATCCGGAGCTCTGGGC TCACGTCCTTGAGGAGACCAACCCATCCAGGAGACAGCTAATTGACCAGGTGGTACAGACAGCATTGTCA GAAACACGGGATCCTGAAGAGATTTCGGTCACTGTCAAAGCCTTTATGACAGCCGACCTGCCTAATGAAC TGATTGAACTGCTGGAGAAGATAGTTCTGGATAACTCTGTCTTCAGCGAGCACAGGAATCTACAGAATCT GTTGATCCTGACTGCCATCAAGGCAGACCGCACACGGGTCATGGAGTACATCAGCCGCCTGGACAACTAT GACGCACTGGACATCGCGAGCATCGCTGTCAGCAGCGCACTGTATGAGGAGGCCTTCACCGTTTTCCACA AGTTTGATATGAATGCCTCAGCAATCCAGGTCCTGATCGAGCACATTGGAAACCTGGACCGGGCATATGA GTTTGCGGAGAGATGCAATGAGCCTGCTGTGTGGAGTCAGCTGGCCCAAGCCCAGCTCCAGAAAGATTTG GTGAAGGAAGCCATCAACTCCTATATCAGAGGGGACGACCCTTCCTCTTACCTGGAAGTTGTTCAGTCAG CCAGCAGGAGCAACAACTGGGAGGATCTAGTTAAATTTCTGCAGATGGCCAGGAAAAAGGGCCGTGAGTC CTATATAGAGACTGAACTTATTTTTGCCTTGGCTAAAACCAGCCGTGTTTCTGAGCTAGAAGATTTTATT AATGGACCCAACAATGCCCACATCCAGCAGGTTGGAGACCGCTGTTACGAGGAGGGAATGTACGAGGCTG CCAAGCTGCTCTATAGCAATGTTTCTAACTTTGCCCGCCTGGCTTCCACCTTGGTTCACCTCGGTGAGTA TCAGGCAGCAGTGGACAACAGCCGCAAGGCCAGCAGCACCCGGACGTGGAAGGAGGTGTGCTTTGCCTGC ATGGATGGACAAGAGTTCCGCTTCGCACAGCTGTGTGGTCTTCACATCGTCATTCATGCAGATGAGCTGG AGGAGCTGATGTGCTATTACCAGGATCGTGGCTACTTTGAGGAGCTGATCTTGCTGTTGGAAGCGGCCCT GGGCCTGGAGCGGGCCCACATGGGCATGTTCACTGAGCTGGCCATCCTCTACTCCAAATTCAAGCCACAG AAGATGCTGGAGCATCTGGAGCTTTTCTGGTCCCGTGTCAACATCCCAAAGGTGCTGAGGGCTGCAGAGC AGGCACACCTGTGGGCTGAGCTGGTGTTCCTCTATGACAAGTACGAGGAGTATGACAATGCTGTGCTCAC CATGATGAGCCACCCCACTGAGGCCTGGAAGGAGGGTCAGTTCAAGGACATCATTACCAAGGTTGCCAAC GTCGAGCTCTGTTACAGAGCCCTGCAGTTCTATTTGGATTACAAACCACTGCTCATCAATGACCTGCTGC TGGTGCTTTCACCCCGGCTGGACCACACCTGGACAGTCAGTTTCTTTTCAAAGGCAGGTCAGCTGCCCCT GGTGAAGCCTTACCTGCGGTCAGTCCAGAGCCACAACAACAAGAGTGTGAATGAGGCACTCAACCACCTG CTGACAGAGGAGGAGGACTATCAGGATGCCATGCAGCATGCTGCAGAGTCGCGGGATGCTGAGCTGGCCC AGAAGTTGCTGCAGTGGTTCCTGGAGGAAGGCAAGAGGGAGTGCTTCGCAGCTTGTCTCTTCACCTGCTA TGACCTGCTTCGCCCAGACATGGTGCTTGAGCTGGCCTGGAGGCACAACCTCGTGGACTTGGCCATGCCC TACTTCATCCAGGTGATGAGGGAGTACCTGAGCAAGGTGGACAAACTGGATGCCTTGGAGAGTCTGCGCA AGCAAGAGGAGCATGTGACAGAGCCTGCCCCTCTCGTGTTTGATTTTGATGGGCATGAATGA
Translation (1583 aa): MAQILPVRFQEHFQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVTIIDMSDPMAPIRRPISAES AIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMAEEVIFWKWVSVNTVALVTETAVYHWSMEGDSQPMK MFDRHTSLVGCQVIHYRTDEYQKWLLLVGISAQQNRVVGAMQLYSVDRKVSQPIEGHAAAFAEFKMEGNA KPATLFCFAVRNPTGGKLHIIEVGQPAAGNQPFVKKAVDVFFPPEAQNDFPVAMQIGAKHGVIYLITKYG YLHLYDLESGVCICMNRISADTIFVTAPHKPTSGIIGVNKKGQVLSVCVEEDNIVNYATNVLQNPDLGLR LAVRSNLAGAEKLFVRKFNTLFAQGSYAEAAKVAASAPKGILRTRETVQKFQSIPAQSGQASPLLQYFGI LLDQGQLNKLESLELCHLVLQQGRKQLLEKWLKEDKLECSEELGDLVKTTDPMLALSVYLRANVPSKVIQ CFAETGQFQKIVLYAKKVGYTPDWIFLLRGVMKISPEQGLQFSRMLVQDEEPLANISQIVDIFMENSLIQ QCTSFLLDALKNNRPAEGLLQTWLLEMNLVHAPQVADAILGNKMFTHYDRAHIAQLCEKAGLLQQALEHY TDLYDIKRAVVHTHLLNPEWLVNFFGSLSVEDSVECLHAMLSANIRQNLQLCVQVASKYHEQLGTQALVE LFESFKSYKGLFYFLGSIVNFSQDPDVHLKYIQAACKTGQIKEVERICRESSCYNPERVKNFLKEAKLTD QLPLIIVCDRFGFVHDLVLYLYRNNLQRYIEIYVQKVNPSRTPAVIGGLLDVDCSEEVIKHLIMAVRGQF STDELVAEVEKRNRLKLLLPWLESQIQEGCEEPATHNALAKIYIDSNNSPECFLRENAYYDSSVVGRYCE KRDPHLACVAYERGQCDLELIKVCNENSLFKSEARYLVCRKDPELWAHVLEETNPSRRQLIDQVVQTALS ETRDPEEISVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYISRLDNY DALDIASIAVSSALYEEAFTVFHKFDMNASAIQVLIEHIGNLDRAYEFAERCNEPAVWSQLAQAQLQKDL VKEAINSYIRGDDPSSYLEVVQSASRSNNWEDLVKFLQMARKKGRESYIETELIFALAKTSRVSELEDFI NGPNNAHIQQVGDRCYEEGMYEAAKLLYSNVSNFARLASTLVHLGEYQAAVDNSRKASSTRTWKEVCFAC MDGQEFRFAQLCGLHIVIHADELEELMCYYQDRGYFEELILLLEAALGLERAHMGMFTELAILYSKFKPQ KMLEHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAVLTMMSHPTEAWKEGQFKDIITKVAN VELCYRALQFYLDYKPLLINDLLLVLSPRLDHTWTVSFFSKAGQLPLVKPYLRSVQSHNNKSVNEALNHL LTEEEDYQDAMQHAAESRDAELAQKLLQWFLEEGKRECFAACLFTCYDLLRPDMVLELAWRHNLVDLAMP YFIQVMREYLSKVDKLDALESLRKQEEHVTEPAPLVFDFDGHE
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