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Report for CCDS54537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54537.1 Public Homo sapiens 22 PNPLA5 24 110 108 CCDS HistoryNCBI Gene:150379Re-query CCDS DB by CCDS ID:54537.1Re-query CCDS DB by GeneID:150379See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54537.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381198.7 ENSP00000370595.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381198.7Link to Ensembl Protein Viewer:ENSP00000370595.2Re-query CCDS DB by Nucleotide ID:ENST00000381198Re-query CCDS DB by Protein ID:ENSP00000370595
Original member Current member NCBI NM_001177675.2 NP_001171146.1 Accepted alive Link to Nucleotide Sequence:NM_001177675.2Link to Protein Sequence:NP_001171146.1Re-query CCDS DB by Nucleotide ID:NM_001177675Re-query CCDS DB by Protein ID:NP_001171146Link to BLAST:NP_001171146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171146.1 315 Q7Z6Z6-2 315 100% 0 0

Chromosomal Locations for CCDS 54537.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 43880795 43880885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43881558 43881674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43884213 43884345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43886303 43886488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43887591 43887651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43889329 43889495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 43891688 43891880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGGCTTCTTAGAGGAGGAGGGCAGATGGAACCTGTCCTTCTCCGGCGCCGGCTACCTGGGCGCCCACC
ACGTGGGCGCCACCGAATGCCTGCGCCAGCGAGCCCCGCGCCTCCTCCAGGGCGCCCGCCGCATCTACGG
TTCCTCGTCTGGGGCGCTCAACGCAGTCAGCATCGTCTGCGGCAAGTCGGTCGACTGCCCCTCCACCATC
ACGGTGTCGCCCTTCCATGGGACAGTGGACATCTGCCCCCAGAGCACCTCCCCCAACCTGCATGAGCTGA
ACGTCTTCAACTTCAGCTTCCAAATCTCCACTGAGAACTTCTTCCTGGGGCTCATATGTCTCATACCCCC
CAGCCTCGAGGTAGTGGCCGACAACTGCAGACAAGGCTACCTGGATGCCCTGAGGTTCCTGGAGAGACGT
GGACTCACCAAGGAACCAGTGCTATGGACGCTGGTGTCTAAGGAACCCCCAGCCCCGGCTGACGGAAACT
GGGATGCTGGCTGTGACCAACGCTGGAAGGGGGGCCTGTCTCTCAACTGGAAAGTGCCCCATGTGCAAGT
CAAGGATGTACCCAACTTTGAGCAGCTCTCACCAGAGCTGGAGGCTGCACTGAAGAAAGCATGTACGAGG
GATCCCAGCCGGTGGGCCCGCTTCTGGCACTCGGGGCCTGGACAGGTGCTGACGTACCTGCTGCTACCCT
GCACACTGCCCTTCGAGTACATCTACTTCCGCAGCAGAAGGTTGGTGGTGTGGCTGCCCGATGTGCCGGC
GGACTTGTGGTGGATGCAGGGCCTGCTGAGGAACATGGCCCTCGAGGTTTTCTCCAGGACCAAGGCCCAG
CTCCTTGGGCCCATCAGCCCTCCGGCCACTCGCGTCCTGGAAACAAGCCCCCTCCAACCCCAGATAGCTC
CTCATAGAGAGGAGCTCGGGCCCACCCACCAGGCCTGA

Translation (315 aa):
MGFLEEEGRWNLSFSGAGYLGAHHVGATECLRQRAPRLLQGARRIYGSSSGALNAVSIVCGKSVDCPSTI
TVSPFHGTVDICPQSTSPNLHELNVFNFSFQISTENFFLGLICLIPPSLEVVADNCRQGYLDALRFLERR
GLTKEPVLWTLVSKEPPAPADGNWDAGCDQRWKGGLSLNWKVPHVQVKDVPNFEQLSPELEAALKKACTR
DPSRWARFWHSGPGQVLTYLLLPCTLPFEYIYFRSRRLVVWLPDVPADLWWMQGLLRNMALEVFSRTKAQ
LLGPISPPATRVLETSPLQPQIAPHREELGPTHQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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