NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54717.1 Public Homo sapiens 4 DOK7 24 110 108 CCDS HistoryNCBI Gene:285489Re-query CCDS DB by CCDS ID:54717.1Re-query CCDS DB by GeneID:285489See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54717.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000507039.5 ENSP00000423614.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000507039.5Link to Ensembl Protein Viewer:ENSP00000423614.1Re-query CCDS DB by Nucleotide ID:ENST00000507039Re-query CCDS DB by Protein ID:ENSP00000423614
Original member Current member NCBI NM_001164673.2 NP_001158145.1 Accepted alive Link to Nucleotide Sequence:NM_001164673.2Link to Protein Sequence:NP_001158145.1Re-query CCDS DB by Nucleotide ID:NM_001164673Re-query CCDS DB by Protein ID:NP_001158145Link to BLAST:NP_001158145.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158145.1 255 Q18PE1-4 255 100% 0 0

Chromosomal Locations for CCDS 54717.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 3463376 3463429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3463506 3463551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3473406 3473636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3476342 3476531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3485539 3485658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3489677 3489796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3492759 3492765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGACCGAGGCGGCGCTGGTGGAGGGCCAGGTCAAGCTGCGGGACGGCAAGAAGTGGAAGAGTAGGTGGC
TGGTGCTGCGGAAGCCGTCGCCCGTGGCAGACTGCCTGCTGATGCTGGTCTACAAGGACAAGTCGGAGCG
TATCAAGGGCCTGCGGGAGCGCAGCAGCCTGACGCTAGAGGACATCTGCGGGCTGGAGCCCGGCCTGCCC
TACGAGGGCCTGGTCCACACGCTGGCCATTGTCTGCCTGTCCCAGGCCATCATGCTGGGCTTTGACAGCC
ACGAGGCCATGTGTGCGTGGGATGCCCGGATCCGCTATGCGCTCGGCGAGGTGCATAGGTTCCATGTGAC
AGTGGCTCCAGGCACCAAGTTGGAGAGCGGCCCGGCTACCCTGCACCTCTGCAATGATGTCCTCGTCTTG
GCCAGGGACATCCCCCCGGCTGTCACGGGGCAGTGGAAGCTGTCTGACCTCCGGCGCTACGGGGCCGTGC
CAAGCGGATTCATCTTTGAAGGCGGGACCAGGGGCTGGCGTCTTCTTCCTGTCCTCGGCCGAGGGGGAGC
AGATCAGCTTCCTGTTCGACTGCATCGTCCGAGGCATCTCCCCCACCAAGGGCCCCTTTGGGCTGCGGCC
GGTTCTACCAGACCCAAGTCCCCCGGGACCCTCGACTGTGGAGGAGCGTGTGGCCCAGGAAGCCCTGGAA
ACCCTACAGCTGGAGAAGCGGCTGAGCCTCCTCTCACATGCGGGCAGGCCGGGCAGTGGAGGGGATGA

Translation (255 aa):
MTEAALVEGQVKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKSERIKGLRERSSLTLEDICGLEPGLP
YEGLVHTLAIVCLSQAIMLGFDSHEAMCAWDARIRYALGEVHRFHVTVAPGTKLESGPATLHLCNDVLVL
ARDIPPAVTGQWKLSDLRRYGAVPSGFIFEGGTRGWRLLPVLGRGGADQLPVRLHRPRHLPHQGPLWAAA
GSTRPKSPGTLDCGGACGPGSPGNPTAGEAAEPPLTCGQAGQWRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH