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Report for CCDS54841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54841.1 Public Homo sapiens 5 UGT3A1 24 110 108 CCDS HistoryNCBI Gene:133688Re-query CCDS DB by CCDS ID:54841.1Re-query CCDS DB by GeneID:133688See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54841.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333811.5 ENSP00000328033.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000333811.5Link to Ensembl Protein Viewer:ENSP00000328033.4Re-query CCDS DB by Nucleotide ID:ENST00000333811Re-query CCDS DB by Protein ID:ENSP00000328033
Original member Current member EBI ENST00000625798.2 ENSP00000487376.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000625798.2Link to Ensembl Protein Viewer:ENSP00000487376.1Re-query CCDS DB by Nucleotide ID:ENST00000625798Re-query CCDS DB by Protein ID:ENSP00000487376
Original member Current member NCBI NM_001171873.2 NP_001165344.1 Accepted alive Link to Nucleotide Sequence:NM_001171873.2Link to Protein Sequence:NP_001165344.1Re-query CCDS DB by Nucleotide ID:NM_001171873Re-query CCDS DB by Protein ID:NP_001165344Link to BLAST:NP_001165344.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165344.1 252 Q6NUS8-2 252 100% 0 0

Chromosomal Locations for CCDS 54841.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35962874 35962951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35965386 35965917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35968019 35968133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35988450 35988483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGCTTCATCAGAGTGGAAAGTTTTTGATCCCAGATATTAAAGAGGAGGAAAAATCATACCAAGTTATCA
GGTGGTTTTCACCTGAAGATCATCAAAAAAGAATTAAGAAGCATTTTGATAGCTACATAGAAACAGCATT
GGATGGCAGAAAAGAATCTGAAGCCCTTGTAAAGCTAATGGAAATATTTGGGACTCAATGTAGTTATTTG
CTAAGCAGAAAGGATATAATGGATTCCTTAAAGAATGAGAACTATGATCTGGTATTTGTTGAAGCATTTG
ATTTCTGTTCTTTCCTGATTGCTGAGAAGCTTGTGAAACCATTTGTGGCCATTCTTCCCACCACATTCGG
CTCTTTGGATTTTGGGCTACCAAGCCCCTTGTCTTATGTTCCAGTATTCCCTTCCTTGCTGACTGATCAC
ATGGACTTCTGGGGCCGAGTGAAGAATTTTCTGATGTTCTTTAGTTTCTCCAGGAGCCAATGGGACATGC
AGTCTACATTTGACAACACCATCAAGGAGCATTTCCCAGAAGGCTCTAGGCCAGTTTTGTCTCATCTTCT
ACTGAAAGCAGAGTTGTGGTTTGTTAACTCTGATTTTGCCTTTGATTTTGCCCGGCCCCTGCTTCCCAAC
ACTGTTTATATTGGAGGCTTGATGGAAAAACCTATTAAACCAGTACCACAAAATGGGCAACCAGCTCTCT
TCACCACCCCCAGCTTATTCTCCTCTGGAGTGTATCCTGAACCACTGAGATGGCTTTGA

Translation (252 aa):
MLHQSGKFLIPDIKEEEKSYQVIRWFSPEDHQKRIKKHFDSYIETALDGRKESEALVKLMEIFGTQCSYL
LSRKDIMDSLKNENYDLVFVEAFDFCSFLIAEKLVKPFVAILPTTFGSLDFGLPSPLSYVPVFPSLLTDH
MDFWGRVKNFLMFFSFSRSQWDMQSTFDNTIKEHFPEGSRPVLSHLLLKAELWFVNSDFAFDFARPLLPN
TVYIGGLMEKPIKPVPQNGQPALFTTPSLFSSGVYPEPLRWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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