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Report for CCDS54852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54852.1 Public Homo sapiens 5 CDC20B 24 110 108 CCDS HistoryNCBI Gene:166979Re-query CCDS DB by CCDS ID:54852.1Re-query CCDS DB by GeneID:166979See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54852.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381375.7 ENSP00000370781.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381375.7Link to Ensembl Protein Viewer:ENSP00000370781.2Re-query CCDS DB by Nucleotide ID:ENST00000381375Re-query CCDS DB by Protein ID:ENSP00000370781
Original member Current member NCBI NM_001170402.1 NP_001163873.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001170402.1Link to Protein Sequence:NP_001163873.1Re-query CCDS DB by Nucleotide ID:NM_001170402Re-query CCDS DB by Protein ID:NP_001163873Link to BLAST:NP_001163873.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001163873.1 519 Q86Y33-1 519 100% 0 0

Chromosomal Locations for CCDS 54852.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 55114218 55114318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55119801 55119918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55120425 55120550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55124803 55125028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55127257 55127351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55128421 55128617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55133412 55133528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55140314 55140407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55143513 55143643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55146628 55146856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55172588 55172650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55172938 55173000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGAGTGGAAACTGGAGCGCACCGCGCCTCGGAGGGTCCGCACGGAAGAGGAGATGCTGTGGGAAAGTA
TCATGCGTGTGCTCTCCAAAGACTTGAAGCAGAAGAGAAGTCAAGATTCCGCCAACGTACTCGATTCAGT
TAATGCTACGTATTCTGACTTTAAGAGCAACTTTGCGAAGAGGCTGTCCGCAGAGGTTCCTGTTGCGAGT
AGCCCCATTACCACAAGGTGGCAGCAAAGTCAAACTAGGGCTCTGTCCTCTGATTCCTTTGGGGAAGAGC
AGTCAACCACCTACCTCCCAGAAGCTTCCGGATCAGTGCTGAAGACACCGCCTGAGAAAGAGACCTTGAC
TCTAGGATCCCGCAAAGAACAACTGAAGACCCCCAGCAAAGGAATTTCTGAAACAAGTAACTCTGCTCTC
CATTTTTGCAAGGCACCTCATGCAATGGACAGAGACTGGAAAGAAAGTGTTGCCTCAAAAGGGCAGAAAT
GCCTAAAACAACTCTTTGTAACCCAGAACGTGGTTCAGCAGGCTAATGGAAAAATGCAGCTCTGTGAGCA
ATCCGAATGTGTTTGGAAAGGCTGCAAAGATGGAGTCAGAGATGAATCCTTCCATCTTAAAAGTTCTGGT
GATATAAACGATTCCATACTCCAACCAGAGGTGAAGATTCATATTACTGGTCTTCGAAATGACTACTATC
TGAATATCCTAGATTGGAGTTTTCAGAATCTTGTTGCCATAGCCCTGGGCTCTGCTGTATACATCTGGAA
TGGGGAGAACCACAATGGGATTGAAAACATAGACTTAAGTCTCACTTGTAACTATATCTCTTCTGTGTCC
TGGATAAAAGAGGGAACTTGCCTGGCAGTTGGCACCAGCGAGGGAGAAGTGCAATTATGGGATGTGGTAA
CTAAAAAGCGGCTGAGAAATATGCTTGGTCATTTGTCAGTAGTTGGGGCTCTGAGCTGGAATCACTTTAT
CCTCAGCAGTGGGTCAAGACTGGGGCGTGTTTATCATCACGATGTTCGGGTAGCCCAGCATCATGTTGGA
ACACTTCGCCACAAGCAAGCTGTGTGTGCTCTGAAGTGGTCACCGGATGGCAGGCTGCTTTCCAGCGGCT
GCAGTGATGGACTGCTGACAATATGGCCCCACGATCCAGGTGCCAGTGCACAGGGCCAACCGCTGAAAGT
CATAACCCAGTCTACGGCAGTCAAGGCCATGGATTGGTGTCCCTGGCAGTCTGGGGTCCTTGCCATTGGA
GGAGGAATGAAGGATGGACGCTTACACATCTTGGATATAAATGCTGGGAAGAGCATCCAGACCCCAAGCA
CAAACTCACAGATTTGTTCCTTAATCTGGCTACCTAAGACAAAGGAGATTGCAACTGGTCAAGGTACTCC
CAAGAATGATGTGACTGTGTGGACCTGTCCCACTGTGTCCAGGTCAGGTGGGTTTTTTGGCCACAGGGGC
AGAGTGCTGCACCTGTCTTTGAGTCCAGACCAGACCCGGGTGTTTTCTGCTGCAGCTGATGGGACGGCCT
CTGTATGGAATTGCTACTAG

Translation (519 aa):
MEWKLERTAPRRVRTEEEMLWESIMRVLSKDLKQKRSQDSANVLDSVNATYSDFKSNFAKRLSAEVPVAS
SPITTRWQQSQTRALSSDSFGEEQSTTYLPEASGSVLKTPPEKETLTLGSRKEQLKTPSKGISETSNSAL
HFCKAPHAMDRDWKESVASKGQKCLKQLFVTQNVVQQANGKMQLCEQSECVWKGCKDGVRDESFHLKSSG
DINDSILQPEVKIHITGLRNDYYLNILDWSFQNLVAIALGSAVYIWNGENHNGIENIDLSLTCNYISSVS
WIKEGTCLAVGTSEGEVQLWDVVTKKRLRNMLGHLSVVGALSWNHFILSSGSRLGRVYHHDVRVAQHHVG
TLRHKQAVCALKWSPDGRLLSSGCSDGLLTIWPHDPGASAQGQPLKVITQSTAVKAMDWCPWQSGVLAIG
GGMKDGRLHILDINAGKSIQTPSTNSQICSLIWLPKTKEIATGQGTPKNDVTVWTCPTVSRSGGFFGHRG
RVLHLSLSPDQTRVFSAAADGTASVWNCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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