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Report for CCDS54880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54880.1 Public Homo sapiens 5 ARB2A 24 110 108 CCDS HistoryNCBI Gene:83989Re-query CCDS DB by CCDS ID:54880.1Re-query CCDS DB by GeneID:83989See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54880.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509163.5 ENSP00000423841.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509163.5Link to Ensembl Protein Viewer:ENSP00000423841.1Re-query CCDS DB by Nucleotide ID:ENST00000509163Re-query CCDS DB by Protein ID:ENSP00000423841
Original member Current member NCBI NM_001163417.1 NP_001156889.1 Accepted alive Link to Nucleotide Sequence:NM_001163417.1Link to Protein Sequence:NP_001156889.1Re-query CCDS DB by Nucleotide ID:NM_001163417Re-query CCDS DB by Protein ID:NP_001156889Link to BLAST:NP_001156889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156889.1 370 Q8WUF8-3 370 100% 0 0

Chromosomal Locations for CCDS 54880.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 93620987 93621129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93776159 93776243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93784383 93784499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93824148 93824267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93881470 93881688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93958777 93958968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93964458 93964523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94050731 94050831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94053126 94053195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGAAAAAAGATGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAA
AGGGACAGTTAAGACACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATG
GAACCAGAAAAGATACGAGGCTCTAGGAGAGATCATCACGAAGTATGTATATGAGCTCCTGGAAAAGGAT
TGTAATTTGAAAAAAGTATCTATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGA
GTGAGGATGCTTTGACAAATCCACAGAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGG
GCAGTGGGCTAGAAGACTTATTATAAATGAAGATCTGGACAGTGGCACACAGATACCGTTTATTAAAAGA
GCTGTGGCTGAAGGATATGGAGTAATAGTACTAAATCCCAATGAAAACTATATTGAAGTAGAAAAGCCGA
AGATACACGTACAGTCATCATCTGATAGTTCAGATGAACCAGCAGAAAAACGGGAAAGAAAAGATAAAGT
TTCTAAAGAAACAAAGAAGCGACGTGATTTCTATGAGAAGTATCGTAACCCCCAAAGAGAAAAAGAAATG
ATGCAATTGTATATCAGAGAAAATGGTTCTCCTGAAGAACATGCAATCTATGTTTGGGATCATTTCATAG
CTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCACAGCTATGGAGGACTTGCTTTTGTTGAACTGAT
GATTCAACGAGAAGCCGATGTAAAAAATAAGGTAACTGCTGTGGCATTGACAGACTCTGTTCACAATGTG
TGGCATCAAGAAGCTGGCAAAACGATTCGAGAATGGATGAGAGAGAACTGTTGTAATTGGGTCTCTAGCT
CAGAACCATTAGACACATCAGTGGAGTCCATGCTACCTGATTGCCCCCGGGTCTCAGCAGGCACCGACCG
TCACGAGCTAACTTCCTGGAAGAGCTTTCCGTCTATTTTCAAATTCTTTACCGAAGCCTCAGAGGCCAAG
ACCAGCTCCCTGAAGCCGGCTGTGACGCGCCGCTCCCACCGCATCAAGCACGAAGAGCTGTAA

Translation (370 aa):
MKKDEPPLDFPDTLEGFEYAFNEKGQLRHIKTGEPFVFNYREDLHRWNQKRYEALGEIITKYVYELLEKD
CNLKKVSIPVDATESEPKSFIFMSEDALTNPQKLMVLIHGSGVVRAGQWARRLIINEDLDSGTQIPFIKR
AVAEGYGVIVLNPNENYIEVEKPKIHVQSSSDSSDEPAEKRERKDKVSKETKKRRDFYEKYRNPQREKEM
MQLYIRENGSPEEHAIYVWDHFIAQAAAENVFFVAHSYGGLAFVELMIQREADVKNKVTAVALTDSVHNV
WHQEAGKTIREWMRENCCNWVSSSEPLDTSVESMLPDCPRVSAGTDRHELTSWKSFPSIFKFFTEASEAK
TSSLKPAVTRRSHRIKHEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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