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Report for CCDS54984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54984.1 Public Homo sapiens 6 LST1 24 110 108 CCDS HistoryNCBI Gene:7940Re-query CCDS DB by CCDS ID:54984.1Re-query CCDS DB by GeneID:7940See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54984.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376093.6 ENSP00000365261.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376093.6Link to Ensembl Protein Viewer:ENSP00000365261.2Re-query CCDS DB by Nucleotide ID:ENST00000376093Re-query CCDS DB by Protein ID:ENSP00000365261
Original member Current member NCBI NM_007161.3 NP_009092.3 Accepted alive Link to Nucleotide Sequence:NM_007161.3Link to Protein Sequence:NP_009092.3Re-query CCDS DB by Nucleotide ID:NM_007161Re-query CCDS DB by Protein ID:NP_009092Link to BLAST:NP_009092.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009092.3 104 O00453-11 104 100% 0 0

Chromosomal Locations for CCDS 54984.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31587300 31587318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31587641 31587733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31587944 31587966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31588497 31588676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (315 nt):
ATGTTATCGCGGAATGATGATATATGTATCTACGGGGGCCTGGGGCTGGGCGGGCTCCTGCTTCTGGCAG
TGGTCCTTCTGTCCGCCTGCCTGTGTTGGCTGCATCGAAGAGTAAAGAGGCTGGAGAGGAGCTGGCACCT
TCTGTCCTGGTCCCAGGCCCAGGGCTCCTCAGAGCAGGAACTCCACTATGCATCTCTGCAGAGGCTGCCA
GTGCCCAGCAGTGAGGGACCTGACCTCAGGGGCAGAGACAAGAGAGGCACCAAGGAGGATCCAAGAGCTG
ACTATGCCTGCATTGCTGAGAACAAACCCACCTGA

Translation (104 aa):
MLSRNDDICIYGGLGLGGLLLLAVVLLSACLCWLHRRVKRLERSWHLLSWSQAQGSSEQELHYASLQRLP
VPSSEGPDLRGRDKRGTKEDPRADYACIAENKPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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