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Report for CCDS55006.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55006.1 Public Homo sapiens 6 MRPS18A 24 110 108 CCDS HistoryNCBI Gene:55168Re-query CCDS DB by CCDS ID:55006.1Re-query CCDS DB by GeneID:55168See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55006.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372116.5 ENSP00000361188.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372116.5Link to Ensembl Protein Viewer:ENSP00000361188.1Re-query CCDS DB by Nucleotide ID:ENST00000372116Re-query CCDS DB by Protein ID:ENSP00000361188
Original member Current member NCBI NM_001193343.2 NP_001180272.1 Accepted alive Link to Nucleotide Sequence:NM_001193343.2Link to Protein Sequence:NP_001180272.1Re-query CCDS DB by Nucleotide ID:NM_001193343Re-query CCDS DB by Protein ID:NP_001180272Link to BLAST:NP_001180272.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180272.1 127 Q9NVS2-3 127 100% 0 0

Chromosomal Locations for CCDS 55006.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43671899 43671906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43675494 43675617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43678518 43678625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43681089 43681120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43687668 43687779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGGCGGCCCTCAAGGCTCTGGTGTCCGGCTGTGGGCGGCTTCTCCGTGGGCTACTAGCGGGCCCGGCAG
CGACCAGCTGGTCTCGGCTTCCAGCTCGCGGGTTCAGGGAAGTGGTGGAGACCCAAGAAGGGAAGACAAC
TATAATTGAAGGCCGTATCACAGCGACTCCCAAGGAGAGTCCAAATCCTCCTAACCCCTCTGGCCAGTGC
CCCATCTGCCGTTGGAACCTGAAGCACAAGTATAACTATGACGATGTTCTGCTGCTTAGCCAGTTCATCC
GGCCTCATGGAGGCATGCTGCCCCGAAAGATCACAGGCCTATGCCAGGAAGAACACCGCAAGATCGAGGA
GTGTGTGAAGATGGCCCACCGAGCAGGTACCTGA

Translation (127 aa):
MAALKALVSGCGRLLRGLLAGPAATSWSRLPARGFREVVETQEGKTTIIEGRITATPKESPNPPNPSGQC
PICRWNLKHKYNYDDVLLLSQFIRPHGGMLPRKITGLCQEEHRKIEECVKMAHRAGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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