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Report for CCDS5501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5501.1 Public Homo sapiens 7 TBRG4 24 110 108 CCDS HistoryNCBI Gene:9238Re-query CCDS DB by CCDS ID:5501.1Re-query CCDS DB by GeneID:9238See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5501.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258770.8 ENSP00000258770.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258770.8Link to Ensembl Protein Viewer:ENSP00000258770.3Re-query CCDS DB by Nucleotide ID:ENST00000258770Re-query CCDS DB by Protein ID:ENSP00000258770
Original member Current member EBI ENST00000494076.5 ENSP00000420597.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000494076.5Link to Ensembl Protein Viewer:ENSP00000420597.1Re-query CCDS DB by Nucleotide ID:ENST00000494076Re-query CCDS DB by Protein ID:ENSP00000420597
Original member Current member NCBI NM_004749.4 NP_004740.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004749.4Link to Protein Sequence:NP_004740.2Re-query CCDS DB by Nucleotide ID:NM_004749Re-query CCDS DB by Protein ID:NP_004740Link to BLAST:NP_004740.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004740.2 631 Q969Z0-1 631 100% 0 0

Chromosomal Locations for CCDS 5501.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45100325 45100426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45101258 45101372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45101503 45101614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45101825 45102070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45102347 45102491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45103333 45103443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45104099 45104256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45104538 45104709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45105441 45105764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45108827 45109237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGGCAGCTCACCTGGTAAAGCGATGCACGTGCCTCCTGAGAGAAGCTGCTCGTCAGGCCCCTGCCATGG
CTCCAGTTGGCCGACTGAGACTTGCCTGGGTAGCCCATAAGACTCTGACTTCCTCAGCCACCTCACCCAT
TTCCCACCTCCCAGGTTCCTTGATGGAGCCGGTGGAGAAGGAACGAGCATCTACTCCCTACATAGAGAAG
CAGGTGGACCACCTCATCAAGAAGGCCACAAGGCCAGAGGAGCTCCTGGAGCTACTTGGTGGCAGTCACG
ACTTGGACAGCAATCAAGCAGCAATGGTACTTATCCGGCTCTCTCACTTGCTGTCTGAGAAGCCAGAAGA
TAAAGGCTTGCTCATACAGGATGCCCACTTTCATCAACTTCTCTGTCTGCTCAACAGTCAGATTGCCTCG
GTCTGGCATGGTACCCTCTCGAAGCTGCTGGGAAGCCTGTATGCTCTGGGCATCCCCAAGGCCTCCAAGG
AGCTGCAGTCGGTGGAGCAGGAGGTCCGCTGGCGCATGCGGAAGCTCAAGTACAAGCACCTGGCCTTCCT
GGCAGAGTCCTGTGCCACCCTCTCACAGGAGCAGCACTCGCAGGAGCTGCTGGCTGAGCTGCTCACACAC
CTGGAAAGGCGTTGGACAGAAATTGAAGATTCCCACACATTAGTGACCGTCATGATGAAGGTGGGACACC
TCTCGGAGCCACTAATGAACCGCCTGGAAGACAAGTGCCTGGAGTTGGTGGAGCACTTTGGCCCCAATGA
GCTGCGGAAGGTGCTGGTGATGCTGGCAGCTCAGAGCCGGCGGTCCGTGCCCTTGCTGCGGGCCATCTCC
TACCACCTGGTGCAGAAGCCCTTCTCTCTGACGAAAGATGTGCTCTTGGACGTGGCCTATGCCTATGGCA
AACTCAGCTTTCACCAGACCCAGGTGTCCCAGCGCCTGGCCACCGACCTGCTATCCCTCATGCCCAGCCT
GACTTCTGGTGAGGTGGCCCACTGTGCCAAGTCCTTCGCCTTACTCAAGTGGCTCAGCCTGCCCCTGTTT
GAGGCCTTTGCCCAGCACGTCCTGAACAGAGCGCAGGACATCACCCTGCCCCACCTGTGCAGCGTACTTC
TGGCTTTTGCGCGTCTGAACTTCCATCCAGACCAAGAGGATCAGTTCTTCAGCCTGGTACATGAGAAGCT
GGGGTCAGAGCTGCCAGGCCTGGAGCCAGCCCTGCAGGTGGACCTGGTGTGGGCCCTGTGTGTGCTGCAG
CAGGCACGGGAAGCAGAGCTGCAAGCCGTCCTCCACCCTGAATTTCACATCCAATTTCTAGGGGGCAAGT
CTCAGAAGGATCAGAACACCTTCCAGAAGCTGCTCCACATCAACGCCACTGCCCTGCTGGAGTACCCCGA
GTACTCGGGTCCCCTTCTGCCTGCCTCGGCTGTGGCCCCTGGGCCCTCAGCCCTTGACAGGAAGGTGACC
CCCCTGCAAAAGGAGCTGCAGGAGACGCTGAAGGGGCTGCTGGGGAGCGCCGACAAGGGCAGCCTCGAGG
TGGCCACGCAGTATGGCTGGGTGCTGGATGCTGAGGTGCTGCTGGACAGTGACGGCGAGTTTCTGCCCGT
AAGGGACTTTGTGGCACCTCACCTTGCCCAGCCAACTGGGAGCCAGTCACCACCTCCAGGGTCTAAGAGG
CTAGCGTTCTTGCGGTGGGAGTTCCCCAACTTCAACAGCCGAAGCAAGGACTTGCTGGGTCGCTTTGTTC
TGGCCCGGCGACACATAGTGGCTGCAGGCTTCCTGATAGTGGACGTCCCATTCTATGAGTGGCTGGAACT
CAAGTCTGAATGGCAGAAAGGCGCCTACCTCAAGGACAAGATGCGCAAAGCGGTGGCTGAGGAGCTGGCC
AAGTGA

Translation (631 aa):
MAAHLVKRCTCLLREAARQAPAMAPVGRLRLAWVAHKTLTSSATSPISHLPGSLMEPVEKERASTPYIEK
QVDHLIKKATRPEELLELLGGSHDLDSNQAAMVLIRLSHLLSEKPEDKGLLIQDAHFHQLLCLLNSQIAS
VWHGTLSKLLGSLYALGIPKASKELQSVEQEVRWRMRKLKYKHLAFLAESCATLSQEQHSQELLAELLTH
LERRWTEIEDSHTLVTVMMKVGHLSEPLMNRLEDKCLELVEHFGPNELRKVLVMLAAQSRRSVPLLRAIS
YHLVQKPFSLTKDVLLDVAYAYGKLSFHQTQVSQRLATDLLSLMPSLTSGEVAHCAKSFALLKWLSLPLF
EAFAQHVLNRAQDITLPHLCSVLLAFARLNFHPDQEDQFFSLVHEKLGSELPGLEPALQVDLVWALCVLQ
QAREAELQAVLHPEFHIQFLGGKSQKDQNTFQKLLHINATALLEYPEYSGPLLPASAVAPGPSALDRKVT
PLQKELQETLKGLLGSADKGSLEVATQYGWVLDAEVLLDSDGEFLPVRDFVAPHLAQPTGSQSPPPGSKR
LAFLRWEFPNFNSRSKDLLGRFVLARRHIVAAGFLIVDVPFYEWLELKSEWQKGAYLKDKMRKAVAEELA
K


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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