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Report for CCDS5521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5521.1 Public Homo sapiens 7 NIPSNAP2 24 110 108 CCDS HistoryNCBI Gene:2631Re-query CCDS DB by CCDS ID:5521.1Re-query CCDS DB by GeneID:2631See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5521.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322090.8 ENSP00000313050.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322090.8Link to Ensembl Protein Viewer:ENSP00000313050.3Re-query CCDS DB by Nucleotide ID:ENST00000322090Re-query CCDS DB by Protein ID:ENSP00000313050
Original member Current member NCBI NM_001483.3 NP_001474.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001483.3Link to Protein Sequence:NP_001474.1Re-query CCDS DB by Nucleotide ID:NM_001483Re-query CCDS DB by Protein ID:NP_001474Link to BLAST:NP_001474.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001474.1 286 O75323-1 286 100% 0 0

Chromosomal Locations for CCDS 5521.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 55964610 55964701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55978126 55978265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55978350 55978395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55981473 55981567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55982210 55982280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55983728 55983868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55984847 55984878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55994894 55994988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55997366 55997449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55999008 55999072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGGCGGCGCGAGTGCTGCGCGCCCGCGGAGCGGCCTGGGCCGGCGGCCTCCTGCAGCGGGCGGCCCCCT
GCAGCCTCCTGCCCAGGCTCCGGACATGGACATCTTCCAGCAACAGATCTCGAGAAGACAGCTGGCTAAA
ATCCTTATTTGTCCGGAAAGTTGATCCAAGAAAAGATGCCCACTCCAATCTCCTAGCCAAAAAGGAAACA
AGCAATCTATACAAATTACAGTTTCACAATGTTAAACCGGAATGCCTAGAAGCATACAACAAAATTTGTC
AAGAGGTGTTGCCAAAGATTCACGAAGATAAACACTACCCTTGTACTTTGGTGGGGACTTGGAACACGTG
GTATGGCGAGCAGGACCAAGCTGTCCACCTCTGGAGGTATGAAGGAGGCTATCCAGCCCTCACAGAAGTC
ATGAATAAACTCAGAGAAAATAAGGAATTTTTGGAATTTCGTAAGGCAAGAAGTGACATGCTTCTCTCCA
GGAAGAATCAGCTCCTGTTGGAGTTCAGTTTCTGGAATGAGCCTGTGCCAAGATCCGGACCTAATATATA
TGAACTCAGGTCTTACCAACTCCGACCAGGAACCATGATTGAATGGGGCAATTACTGGGCTCGTGCAATC
CGCTTCAGACAGGATGGTAACGAAGCCGTCGGAGGATTCTTCTCTCAGATTGGGCAGCTGTACATGGTGC
ACCATCTTTGGGCTTACAGGGATCTTCAGACCAGGGAAGACATACGGAATGCAGCATGGCACAAACATGG
CTGGGAGGAATTGGTATATTACACAGTTCCACTTATTCAGGAAATGGAATCCAGAATCATGATCCCACTG
AAGACCTCGCCCCTCCAGTAA

Translation (286 aa):
MAARVLRARGAAWAGGLLQRAAPCSLLPRLRTWTSSSNRSREDSWLKSLFVRKVDPRKDAHSNLLAKKET
SNLYKLQFHNVKPECLEAYNKICQEVLPKIHEDKHYPCTLVGTWNTWYGEQDQAVHLWRYEGGYPALTEV
MNKLRENKEFLEFRKARSDMLLSRKNQLLLEFSFWNEPVPRSGPNIYELRSYQLRPGTMIEWGNYWARAI
RFRQDGNEAVGGFFSQIGQLYMVHHLWAYRDLQTREDIRNAAWHKHGWEELVYYTVPLIQEMESRIMIPL
KTSPLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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