NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55421.1 Public Homo sapiens X FAM120C 24 110 108 CCDS HistoryNCBI Gene:54954Re-query CCDS DB by CCDS ID:55421.1Re-query CCDS DB by GeneID:54954See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000477084.1 ENSP00000420718.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000477084.1Link to Ensembl Protein Viewer:ENSP00000420718.1Re-query CCDS DB by Nucleotide ID:ENST00000477084Re-query CCDS DB by Protein ID:ENSP00000420718
Original member Current member NCBI NM_198456.3 NP_940858.2 Accepted alive Link to Nucleotide Sequence:NM_198456.3Link to Protein Sequence:NP_940858.2Re-query CCDS DB by Nucleotide ID:NM_198456Re-query CCDS DB by Protein ID:NP_940858Link to BLAST:NP_940858.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940858.2 238 Q9NX05-2 238 100% 0 0

Chromosomal Locations for CCDS 55421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 54174129 54174146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54182500 54183198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGGTGTCCAGGGCTTCCAAGAGTTCCTGGAGAAGCGCTGTCCCGGGGCCGTGGTGCCCGTGGACCTCC
TAAAACTCGCGCGCACGGTCTCGCGCCAGCAGCAGCAGCAGCACTTGCACCGCCAGCTGCCGCCGACTGC
AGCCCTAGCGCCCGGGGCTCCACGCGCCGCCAGGGGCTCCGTGCCTCTGCAACCGCCGCTTCCGCCCGCT
GCCTTGGGTGCCTACTCCGGGGGCGCGGGGCCGACTCGGCACCATCACCCCGCTCACCACTTCCACCATC
ATGGCCAAGCGCAGCCCGGGCTGCACCCTCCGCTGCCGCCGCCGCCGCCCCCTCAGCTGCCCGGGGCCCG
GGTGCTGGTGGACGCCGGCTCGGCGCTGCCGCGGCTCTATGGCGGCTACCAGACGGATTGGGTGTGTGGC
GGCCAATGGAACGCCATGCTGGGCTACTTGTCAGCGCTGTGCCAGGCTTGTGCCTATCCTGGCGGCGACG
GCCTGGAGCTCGTGGTCATGTTCCCGGGGGGCCTGGGCAAGGACCGGCTGGCCGAGTGGGGCCGTCGGTG
CCAGGCCGAGCGGCAGACAGCGCAACTGATCGTGGGACACGTGGGCAACAAGGGCACCCCTCCACCGCGG
GCCTGGTTCCTGCCACCGGCCTGCCTGAGCCACTGCGTGAGGCTAGCACTCATCCGCTTCCGGGTCAAGC
AAGCTGCCATGTTGTGA

Translation (238 aa):
MGVQGFQEFLEKRCPGAVVPVDLLKLARTVSRQQQQQHLHRQLPPTAALAPGAPRAARGSVPLQPPLPPA
ALGAYSGGAGPTRHHHPAHHFHHHGQAQPGLHPPLPPPPPPQLPGARVLVDAGSALPRLYGGYQTDWVCG
GQWNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGHVGNKGTPPPR
AWFLPPACLSHCVRLALIRFRVKQAAML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH