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Report for CCDS55490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55490.1 Public Homo sapiens X IGSF1 24 110 108 CCDS HistoryNCBI Gene:3547Re-query CCDS DB by CCDS ID:55490.1Re-query CCDS DB by GeneID:3547See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55490.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370904.6 ENSP00000359941.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370904.6Link to Ensembl Protein Viewer:ENSP00000359941.1Re-query CCDS DB by Nucleotide ID:ENST00000370904Re-query CCDS DB by Protein ID:ENSP00000359941
Original member Current member EBI ENST00000370910.5 ENSP00000359947.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370910.5Link to Ensembl Protein Viewer:ENSP00000359947.1Re-query CCDS DB by Nucleotide ID:ENST00000370910Re-query CCDS DB by Protein ID:ENSP00000359947
Original member Current member NCBI NM_001170962.2 NP_001164433.1 Accepted alive Link to Nucleotide Sequence:NM_001170962.2Link to Protein Sequence:NP_001164433.1Re-query CCDS DB by Nucleotide ID:NM_001170962Re-query CCDS DB by Protein ID:NP_001164433Link to BLAST:NP_001164433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164433.1 1327 Q8N6C5-2 1327 100% 0 0

Chromosomal Locations for CCDS 55490.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 131273796 131273931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131274083 131274206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131274599 131274877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131274999 131275286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131275478 131275765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131275961 131276248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131276939 131277226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131277856 131278134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131278461 131278751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131279143 131279175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131279271 131279341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131281218 131281338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131281666 131281944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131282444 131282737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131282980 131283264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131285179 131285466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131285767 131286048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 131286605 131286674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3984 nt):
ATGACCCTGGACAGACCAGGGGAGGGGGCCACCATGCTGAAGACATTCACTGTTTTGCTCTTTTGCATTC
TGATGGACCCTCAACCAGAGTTGTGGATAGAGTCCAACTACCCCCAGGCCCCTTGGGAGAACATCACGCT
TTGGTGCCGAAGCCCCTCTCGGATATCAAGCAAGTTCCTGCTGCTGAAGGATAAGACACAGATGACCTGG
ATCCGCCCTTCCCACAAGACCTTCCAAGTTTCATTCCTTATAGGTGCCCTTACTGAGTCCAATGCAGGTC
TTTACCGGTGCTGCTACTGGAAGGAGACAGGCTGGTCAAAGCCCAGTAAAGTTCTAGAGTTGGAGGCACC
AGGCCAACTGCCCAAGCCCATCTTCTGGATTCAGGCTGAGACCCCCGCTCTTCCTGGGTGTAATGTTAAC
ATCCTCTGCCATGGCTGGCTGCAGGATTTGGTATTCATGCTGTTTAAAGAGGGATATGCAGAGCCTGTGG
ATTACCAAGTCCCAACTGGGACAATGGCCATATTCTCCATTGACAACCTGACACCTGAGGATGAAGGGGT
TTACATCTGCCGCACTCATATCCAGATGCTCCCCACCCTGTGGTCAGAGCCCAGCAACCCCCTGAAGCTG
GTTGTAGCAGGACTCTACCCCAAACCAACTTTGACAGCCCATCCTGGGCCCATCATGGCACCTGGAGAAA
GCCTGAATCTCAGGTGCCAAGGGCCAATCTATGGAATGACCTTTGCTCTAATGAGGGTTGAAGACTTGGA
GAAGTCCTTTTACCACAAGAAGACAATAAAAAATGAGGCAAATTTCTTCTTCCAGTCTTTGAAGATCCAA
GATACTGGACATTACCTCTGTTTTTACTATGACGCATCATATAGAGGTTCACTCCTTAGTGATGTCCTGA
AAATCTGGGTGACTGACACTTTCCCCAAGACCTGGCTACTTGCTCGGCCCAGTGCTGTGGTCCAAATGGG
TCAGAATGTGAGCCTACGGTGTCGAGGACCAGTGGATGGAGTGGGTCTTGCACTCTATAAGAAAGGAGAA
GACAAACCACTTCAATTTTTGGATGCCACCAGCATCGATGACAACACATCATTCTTCCTCAACAATGTAA
CCTACAGTGATACTGGCATCTATAGCTGCCACTATCTTCTCACCTGGAAGACCTCCATTAGGATGCCATC
ACACAACACTGTGGAGCTTATGGTTGTAGATAAGCCCCCCAAACCCTCCCTGTCAGCTTGGCCAAGCACT
GTGTTCAAGCTAGGAAAGGCCATCACCCTTCAGTGCCGAGTATCTCATCCAGTACTGGAATTTTCTCTGG
AATGGGAAGAAAGAGAAACATTCCAAAAATTCTCAGTAAACGGAGACTTCATCATCAGTAATGTTGACGG
GAAAGGCACAGGGACCTACAGTTGCAGCTATCGCGTAGAGACACATCCTAACATCTGGTCACATCGCAGT
GAGCCCCTGAAGCTGATGGGGCCAGCAGGCTATCTCACCTGGAATTACGTTCTGAATGAAGCTATCAGGT
TGTCTCTAATCATGCAGCTTGTTGCCTTGCTGTTGGTAGTGCTGTGGATAAGGTGGAAGTGTCGGAGACT
CAGAATCAGAGAAGCCTGGTTGCTGGGAACAGCTCAAGGGGTCACCATGCTCTTCATAGTCACGGCCCTT
CTCTGCTGTGGACTGTGCAATGGGGTATTGATAGAAGAGACTGAAATAGTCATGCCAACCCCTAAGCCTG
AGCTGTGGGCAGAGACCAACTTTCCTCTGGCCCCGTGGAAGAACTTAACCCTCTGGTGCAGAAGCCCTTC
TGGCTCAACTAAGGAGTTTGTGTTGCTGAAGGATGGGACCGGGTGGATCGCCACTCGCCCGGCCTCAGAG
CAGGTCCGGGCTGCCTTCCCCCTTGGCGCCCTGACCCAGAGCCACACCGGGAGCTACCACTGCCATTCAT
GGGAGGAGATGGCTGTATCGGAGCCCAGTGAGGCACTTGAGCTGGTGGGGACAGACATCCTCCCCAAACC
TGTCATTTCTGCTTCCCCCACAATCCGGGGCCAGGAACTACAACTCCGGTGCAAAGGATGGCTGGCAGGC
ATGGGGTTTGCTCTGTATAAGGAGGGAGAGCAAGAACCTGTCCAGCAACTTGGTGCTGTTGGAAGAGAAG
CCTTCTTTACAATCCAGAGAATGGAGGATAAAGACGAAGGCAATTACAGCTGCCGCACTCACACTGAAAA
ACGCCCCTTCAAGTGGTCTGAGCCCAGTGAGCCGCTGGAGCTTGTCATAAAAGAAATGTACCCTAAGCCC
TTCTTCAAGACATGGGCCAGCCCTGTGGTCACCCCTGGTGCCCGAGTGACTTTCAATTGCTCCACCCCCC
ACCAGCATATGAGCTTTATTCTTTACAAAGATGGAAGTGAAATAGCATCCAGTGACAGGTCCTGGGCAAG
TCCGGGGGCCAGTGCAGCTCACTTTCTAATCATTTCGGTGGGCATTGGTGATGGAGGGAATTACAGCTGC
CGATATTATGACTTTTCTATCTGGTCTGAGCCCAGCGACCCTGTGGAGCTCGTGGTGACAGAATTCTACC
CCAAACCCACTCTCCTGGCACAGCCAGGTCCTGTGGTGTTTCCTGGGAAGAGTGTGATCCTGCGCTGCCA
AGGGACTTTCCAGGGCATGAGGTTCGCCCTCTTGCAGGAGGGAGCCCATGTTCCCTTACAGTTTCGGAGT
GTCTCAGGGAACTCAGCTGACTTCCTTCTCCACACTGTTGGAGCAGAGGACTCTGGGAACTATAGCTGTA
TCTACTATGAGACAACCATGTCAAACAGGGGGTCATATCTCAGTATGCCCCTTATGATCTGGGTGACTGA
CACATTCCCTAAGCCATGGTTGTTTGCTGAGCCCAGTTCTGTGGTTCCCATGGGGCAGAATGTTACTCTC
TGGTGCCGAGGGCCGGTCCATGGAGTAGGATACATTCTGCACAAAGAAGGAGAAGCCACTTCAATGCAGC
TCTGGGGATCCACCAGTAATGACGGGGCATTCCCCATCACCAATATATCTGGTACTAGCATGGGGCGTTA
CAGCTGCTGCTACCACCCTGACTGGACCAGTTCTATCAAGATACAACCTAGCAACACCCTGGAACTCCTA
GTCACAGGCTTACTCCCCAAACCCAGCCTATTAGCCCAGCCTGGTCCCATGGTGGCCCCTGGCGAAAATA
TGACTCTTCAGTGTCAAGGGGAACTGCCAGACTCAACATTTGTCCTGTTGAAGGAGGGGGCTCAGGAGCC
TTTAGAGCAACAGAGGCCAAGTGGGTACAGGGCTGACTTCTGGATGCCAGCAGTGAGAGGTGAAGACTCT
GGGATCTATAGCTGTGTTTATTATTTGGACTCTACTCCCTTTGCAGCTTCAAATCACAGTGACTCCCTGG
AGATCTGGGTGACTGATAAGCCCCCTAAACCCTCTCTGTCAGCCTGGCCCAGCACCATGTTCAAGTTAGG
GAAGGACATCACCCTTCAGTGCCGAGGACCCCTGCCAGGTGTTGAATTTGTCCTAGAACATGATGGAGAA
GAAGCACCTCAGCAGTTTTCAGAGGATGGAGACTTTGTCATCAACAACGTAGAAGGAAAAGGCATTGGAA
ACTACAGCTGCAGCTACCGCCTCCAGGCCTACCCTGATATCTGGTCAGAGCCTAGTGATCCCCTGGAGCT
GGTGGGGGCAGCAGGGCCTGTTGCTCAGGAGTGCACTGTAGGGAACATTGTCCGAAGTAGCCTAATCGTG
GTGGTTGTTGTAGCCTTGGGGGTAGTGCTAGCCATAGAGTGGAAGAAGTGGCCTCGACTGCGAACCAGAG
GCTCAGAGACAGACGGAAGAGACCAGACCATTGCCCTTGAAGAGTGTAACCAAGAAGGAGAACCAGGCAC
CCCTGCCAATTCTCCTTCATCAACCTCTCAGAGAATCTCTGTGGAACTGCCCGTTCCAATATAA

Translation (1327 aa):
MTLDRPGEGATMLKTFTVLLFCILMDPQPELWIESNYPQAPWENITLWCRSPSRISSKFLLLKDKTQMTW
IRPSHKTFQVSFLIGALTESNAGLYRCCYWKETGWSKPSKVLELEAPGQLPKPIFWIQAETPALPGCNVN
ILCHGWLQDLVFMLFKEGYAEPVDYQVPTGTMAIFSIDNLTPEDEGVYICRTHIQMLPTLWSEPSNPLKL
VVAGLYPKPTLTAHPGPIMAPGESLNLRCQGPIYGMTFALMRVEDLEKSFYHKKTIKNEANFFFQSLKIQ
DTGHYLCFYYDASYRGSLLSDVLKIWVTDTFPKTWLLARPSAVVQMGQNVSLRCRGPVDGVGLALYKKGE
DKPLQFLDATSIDDNTSFFLNNVTYSDTGIYSCHYLLTWKTSIRMPSHNTVELMVVDKPPKPSLSAWPST
VFKLGKAITLQCRVSHPVLEFSLEWEERETFQKFSVNGDFIISNVDGKGTGTYSCSYRVETHPNIWSHRS
EPLKLMGPAGYLTWNYVLNEAIRLSLIMQLVALLLVVLWIRWKCRRLRIREAWLLGTAQGVTMLFIVTAL
LCCGLCNGVLIEETEIVMPTPKPELWAETNFPLAPWKNLTLWCRSPSGSTKEFVLLKDGTGWIATRPASE
QVRAAFPLGALTQSHTGSYHCHSWEEMAVSEPSEALELVGTDILPKPVISASPTIRGQELQLRCKGWLAG
MGFALYKEGEQEPVQQLGAVGREAFFTIQRMEDKDEGNYSCRTHTEKRPFKWSEPSEPLELVIKEMYPKP
FFKTWASPVVTPGARVTFNCSTPHQHMSFILYKDGSEIASSDRSWASPGASAAHFLIISVGIGDGGNYSC
RYYDFSIWSEPSDPVELVVTEFYPKPTLLAQPGPVVFPGKSVILRCQGTFQGMRFALLQEGAHVPLQFRS
VSGNSADFLLHTVGAEDSGNYSCIYYETTMSNRGSYLSMPLMIWVTDTFPKPWLFAEPSSVVPMGQNVTL
WCRGPVHGVGYILHKEGEATSMQLWGSTSNDGAFPITNISGTSMGRYSCCYHPDWTSSIKIQPSNTLELL
VTGLLPKPSLLAQPGPMVAPGENMTLQCQGELPDSTFVLLKEGAQEPLEQQRPSGYRADFWMPAVRGEDS
GIYSCVYYLDSTPFAASNHSDSLEIWVTDKPPKPSLSAWPSTMFKLGKDITLQCRGPLPGVEFVLEHDGE
EAPQQFSEDGDFVINNVEGKGIGNYSCSYRLQAYPDIWSEPSDPLELVGAAGPVAQECTVGNIVRSSLIV
VVVVALGVVLAIEWKKWPRLRTRGSETDGRDQTIALEECNQEGEPGTPANSPSSTSQRISVELPVPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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