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Report for CCDS55490.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
55490.1 |
Public |
Homo sapiens |
X |
IGSF1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:3547](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:55490.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:3547](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome X in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 55490.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000370904.6 |
ENSP00000359941.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000370904.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000359941.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000370904](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000359941](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000370910.5 |
ENSP00000359947.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000370910.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000359947.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000370910](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000359947](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001170962.2 |
NP_001164433.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001170962.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001164433.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001170962](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001164433](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001164433.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001164433.1 |
1327 |
Q8N6C5-2 |
1327 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 55490.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3984 nt): ATGACCCTGGACAGACCAGGGGAGGGGGCCACCATGCTGAAGACATTCACTGTTTTGCTCTTTTGCATTC TGATGGACCCTCAACCAGAGTTGTGGATAGAGTCCAACTACCCCCAGGCCCCTTGGGAGAACATCACGCT TTGGTGCCGAAGCCCCTCTCGGATATCAAGCAAGTTCCTGCTGCTGAAGGATAAGACACAGATGACCTGG ATCCGCCCTTCCCACAAGACCTTCCAAGTTTCATTCCTTATAGGTGCCCTTACTGAGTCCAATGCAGGTC TTTACCGGTGCTGCTACTGGAAGGAGACAGGCTGGTCAAAGCCCAGTAAAGTTCTAGAGTTGGAGGCACC AGGCCAACTGCCCAAGCCCATCTTCTGGATTCAGGCTGAGACCCCCGCTCTTCCTGGGTGTAATGTTAAC ATCCTCTGCCATGGCTGGCTGCAGGATTTGGTATTCATGCTGTTTAAAGAGGGATATGCAGAGCCTGTGG ATTACCAAGTCCCAACTGGGACAATGGCCATATTCTCCATTGACAACCTGACACCTGAGGATGAAGGGGT TTACATCTGCCGCACTCATATCCAGATGCTCCCCACCCTGTGGTCAGAGCCCAGCAACCCCCTGAAGCTG GTTGTAGCAGGACTCTACCCCAAACCAACTTTGACAGCCCATCCTGGGCCCATCATGGCACCTGGAGAAA GCCTGAATCTCAGGTGCCAAGGGCCAATCTATGGAATGACCTTTGCTCTAATGAGGGTTGAAGACTTGGA GAAGTCCTTTTACCACAAGAAGACAATAAAAAATGAGGCAAATTTCTTCTTCCAGTCTTTGAAGATCCAA GATACTGGACATTACCTCTGTTTTTACTATGACGCATCATATAGAGGTTCACTCCTTAGTGATGTCCTGA AAATCTGGGTGACTGACACTTTCCCCAAGACCTGGCTACTTGCTCGGCCCAGTGCTGTGGTCCAAATGGG TCAGAATGTGAGCCTACGGTGTCGAGGACCAGTGGATGGAGTGGGTCTTGCACTCTATAAGAAAGGAGAA GACAAACCACTTCAATTTTTGGATGCCACCAGCATCGATGACAACACATCATTCTTCCTCAACAATGTAA CCTACAGTGATACTGGCATCTATAGCTGCCACTATCTTCTCACCTGGAAGACCTCCATTAGGATGCCATC ACACAACACTGTGGAGCTTATGGTTGTAGATAAGCCCCCCAAACCCTCCCTGTCAGCTTGGCCAAGCACT GTGTTCAAGCTAGGAAAGGCCATCACCCTTCAGTGCCGAGTATCTCATCCAGTACTGGAATTTTCTCTGG AATGGGAAGAAAGAGAAACATTCCAAAAATTCTCAGTAAACGGAGACTTCATCATCAGTAATGTTGACGG GAAAGGCACAGGGACCTACAGTTGCAGCTATCGCGTAGAGACACATCCTAACATCTGGTCACATCGCAGT GAGCCCCTGAAGCTGATGGGGCCAGCAGGCTATCTCACCTGGAATTACGTTCTGAATGAAGCTATCAGGT TGTCTCTAATCATGCAGCTTGTTGCCTTGCTGTTGGTAGTGCTGTGGATAAGGTGGAAGTGTCGGAGACT CAGAATCAGAGAAGCCTGGTTGCTGGGAACAGCTCAAGGGGTCACCATGCTCTTCATAGTCACGGCCCTT CTCTGCTGTGGACTGTGCAATGGGGTATTGATAGAAGAGACTGAAATAGTCATGCCAACCCCTAAGCCTG AGCTGTGGGCAGAGACCAACTTTCCTCTGGCCCCGTGGAAGAACTTAACCCTCTGGTGCAGAAGCCCTTC TGGCTCAACTAAGGAGTTTGTGTTGCTGAAGGATGGGACCGGGTGGATCGCCACTCGCCCGGCCTCAGAG CAGGTCCGGGCTGCCTTCCCCCTTGGCGCCCTGACCCAGAGCCACACCGGGAGCTACCACTGCCATTCAT GGGAGGAGATGGCTGTATCGGAGCCCAGTGAGGCACTTGAGCTGGTGGGGACAGACATCCTCCCCAAACC TGTCATTTCTGCTTCCCCCACAATCCGGGGCCAGGAACTACAACTCCGGTGCAAAGGATGGCTGGCAGGC ATGGGGTTTGCTCTGTATAAGGAGGGAGAGCAAGAACCTGTCCAGCAACTTGGTGCTGTTGGAAGAGAAG CCTTCTTTACAATCCAGAGAATGGAGGATAAAGACGAAGGCAATTACAGCTGCCGCACTCACACTGAAAA ACGCCCCTTCAAGTGGTCTGAGCCCAGTGAGCCGCTGGAGCTTGTCATAAAAGAAATGTACCCTAAGCCC TTCTTCAAGACATGGGCCAGCCCTGTGGTCACCCCTGGTGCCCGAGTGACTTTCAATTGCTCCACCCCCC ACCAGCATATGAGCTTTATTCTTTACAAAGATGGAAGTGAAATAGCATCCAGTGACAGGTCCTGGGCAAG TCCGGGGGCCAGTGCAGCTCACTTTCTAATCATTTCGGTGGGCATTGGTGATGGAGGGAATTACAGCTGC CGATATTATGACTTTTCTATCTGGTCTGAGCCCAGCGACCCTGTGGAGCTCGTGGTGACAGAATTCTACC CCAAACCCACTCTCCTGGCACAGCCAGGTCCTGTGGTGTTTCCTGGGAAGAGTGTGATCCTGCGCTGCCA AGGGACTTTCCAGGGCATGAGGTTCGCCCTCTTGCAGGAGGGAGCCCATGTTCCCTTACAGTTTCGGAGT GTCTCAGGGAACTCAGCTGACTTCCTTCTCCACACTGTTGGAGCAGAGGACTCTGGGAACTATAGCTGTA TCTACTATGAGACAACCATGTCAAACAGGGGGTCATATCTCAGTATGCCCCTTATGATCTGGGTGACTGA CACATTCCCTAAGCCATGGTTGTTTGCTGAGCCCAGTTCTGTGGTTCCCATGGGGCAGAATGTTACTCTC TGGTGCCGAGGGCCGGTCCATGGAGTAGGATACATTCTGCACAAAGAAGGAGAAGCCACTTCAATGCAGC TCTGGGGATCCACCAGTAATGACGGGGCATTCCCCATCACCAATATATCTGGTACTAGCATGGGGCGTTA CAGCTGCTGCTACCACCCTGACTGGACCAGTTCTATCAAGATACAACCTAGCAACACCCTGGAACTCCTA GTCACAGGCTTACTCCCCAAACCCAGCCTATTAGCCCAGCCTGGTCCCATGGTGGCCCCTGGCGAAAATA TGACTCTTCAGTGTCAAGGGGAACTGCCAGACTCAACATTTGTCCTGTTGAAGGAGGGGGCTCAGGAGCC TTTAGAGCAACAGAGGCCAAGTGGGTACAGGGCTGACTTCTGGATGCCAGCAGTGAGAGGTGAAGACTCT GGGATCTATAGCTGTGTTTATTATTTGGACTCTACTCCCTTTGCAGCTTCAAATCACAGTGACTCCCTGG AGATCTGGGTGACTGATAAGCCCCCTAAACCCTCTCTGTCAGCCTGGCCCAGCACCATGTTCAAGTTAGG GAAGGACATCACCCTTCAGTGCCGAGGACCCCTGCCAGGTGTTGAATTTGTCCTAGAACATGATGGAGAA GAAGCACCTCAGCAGTTTTCAGAGGATGGAGACTTTGTCATCAACAACGTAGAAGGAAAAGGCATTGGAA ACTACAGCTGCAGCTACCGCCTCCAGGCCTACCCTGATATCTGGTCAGAGCCTAGTGATCCCCTGGAGCT GGTGGGGGCAGCAGGGCCTGTTGCTCAGGAGTGCACTGTAGGGAACATTGTCCGAAGTAGCCTAATCGTG GTGGTTGTTGTAGCCTTGGGGGTAGTGCTAGCCATAGAGTGGAAGAAGTGGCCTCGACTGCGAACCAGAG GCTCAGAGACAGACGGAAGAGACCAGACCATTGCCCTTGAAGAGTGTAACCAAGAAGGAGAACCAGGCAC CCCTGCCAATTCTCCTTCATCAACCTCTCAGAGAATCTCTGTGGAACTGCCCGTTCCAATATAA
Translation (1327 aa): MTLDRPGEGATMLKTFTVLLFCILMDPQPELWIESNYPQAPWENITLWCRSPSRISSKFLLLKDKTQMTW IRPSHKTFQVSFLIGALTESNAGLYRCCYWKETGWSKPSKVLELEAPGQLPKPIFWIQAETPALPGCNVN ILCHGWLQDLVFMLFKEGYAEPVDYQVPTGTMAIFSIDNLTPEDEGVYICRTHIQMLPTLWSEPSNPLKL VVAGLYPKPTLTAHPGPIMAPGESLNLRCQGPIYGMTFALMRVEDLEKSFYHKKTIKNEANFFFQSLKIQ DTGHYLCFYYDASYRGSLLSDVLKIWVTDTFPKTWLLARPSAVVQMGQNVSLRCRGPVDGVGLALYKKGE DKPLQFLDATSIDDNTSFFLNNVTYSDTGIYSCHYLLTWKTSIRMPSHNTVELMVVDKPPKPSLSAWPST VFKLGKAITLQCRVSHPVLEFSLEWEERETFQKFSVNGDFIISNVDGKGTGTYSCSYRVETHPNIWSHRS EPLKLMGPAGYLTWNYVLNEAIRLSLIMQLVALLLVVLWIRWKCRRLRIREAWLLGTAQGVTMLFIVTAL LCCGLCNGVLIEETEIVMPTPKPELWAETNFPLAPWKNLTLWCRSPSGSTKEFVLLKDGTGWIATRPASE QVRAAFPLGALTQSHTGSYHCHSWEEMAVSEPSEALELVGTDILPKPVISASPTIRGQELQLRCKGWLAG MGFALYKEGEQEPVQQLGAVGREAFFTIQRMEDKDEGNYSCRTHTEKRPFKWSEPSEPLELVIKEMYPKP FFKTWASPVVTPGARVTFNCSTPHQHMSFILYKDGSEIASSDRSWASPGASAAHFLIISVGIGDGGNYSC RYYDFSIWSEPSDPVELVVTEFYPKPTLLAQPGPVVFPGKSVILRCQGTFQGMRFALLQEGAHVPLQFRS VSGNSADFLLHTVGAEDSGNYSCIYYETTMSNRGSYLSMPLMIWVTDTFPKPWLFAEPSSVVPMGQNVTL WCRGPVHGVGYILHKEGEATSMQLWGSTSNDGAFPITNISGTSMGRYSCCYHPDWTSSIKIQPSNTLELL VTGLLPKPSLLAQPGPMVAPGENMTLQCQGELPDSTFVLLKEGAQEPLEQQRPSGYRADFWMPAVRGEDS GIYSCVYYLDSTPFAASNHSDSLEIWVTDKPPKPSLSAWPSTMFKLGKDITLQCRGPLPGVEFVLEHDGE EAPQQFSEDGDFVINNVEGKGIGNYSCSYRLQAYPDIWSEPSDPLELVGAAGPVAQECTVGNIVRSSLIV VVVVALGVVLAIEWKKWPRLRTRGSETDGRDQTIALEECNQEGEPGTPANSPSSTSQRISVELPVPI
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