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Report for CCDS55592.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55592.1 Public Homo sapiens 1 SMAP2 24 110 108 CCDS HistoryNCBI Gene:64744Re-query CCDS DB by CCDS ID:55592.1Re-query CCDS DB by GeneID:64744See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55592.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372708.5 ENSP00000361793.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372708.5Link to Ensembl Protein Viewer:ENSP00000361793.1Re-query CCDS DB by Nucleotide ID:ENST00000372708Re-query CCDS DB by Protein ID:ENSP00000361793
Original member Current member NCBI NM_001198978.2 NP_001185907.1 Accepted alive Link to Nucleotide Sequence:NM_001198978.2Link to Protein Sequence:NP_001185907.1Re-query CCDS DB by Nucleotide ID:NM_001198978Re-query CCDS DB by Protein ID:NP_001185907Link to BLAST:NP_001185907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185907.1 399 Q8WU79-2 399 100% 0 0

Chromosomal Locations for CCDS 55592.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 40374696 40374708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40406736 40406869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40408653 40408738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40409757 40409835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40413016 40413102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40414159 40414240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40415272 40415381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40416176 40416341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40416780 40417096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 40421976 40422101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGATTTTTAAAGGGCCGCGATGGGCCTCTTGGAACATTGGTGTGTTCATCTGCATTCGATGTGCTGGAA
TCCACAGGAATCTGGGGGTGCACATATCCAGGGTAAAGTCAGTTAACCTCGACCAGTGGACTCAAGAACA
GATTCAGTGCATGCAAGAGATGGGAAATGGAAAGGCAAACCGACTTTATGAAGCCTATCTTCCTGAGACC
TTTCGGCGACCTCAGATAGACCCAGCTGTTGAAGGATTTATTCGAGACAAATATGAGAAGAAGAAATACA
TGGACCGAAGTCTGGACATCAATGCCTTTAGGAAAGAAAAAGATGACAAGTGGAAAAGAGGGAGCGAACC
AGTTCCAGAAAAAAAATTGGAACCTGTTGTTTTTGAGAAGGTGAAAATGCCACAGAAAAAAGAAGACCCA
CAGCTACCTCGGAAAAGCTCCCCGAAATCCACAGCGCCTGTCATGGATTTGTTGGGCCTTGATGCTCCTG
TGGCCTGCTCCATTGCAAATAGTAAGACCAGCAATACCCTAGAGAAGGATTTAGATCTGTTGGCCTCTGT
TCCATCCCCTTCTTCTTCCGGTTCCAGAAAGGTTGTAGGTTCCATGCCAACTGCAGGGAGTGCCGGCTCT
GTTCCTGAAAATCTGAACCTGTTTCCGGAGCCAGGGAGCAAATCAGAAGAAATAGGCAAGAAACAGCTCT
CTAAAGACTCCATTCTTTCACTGTATGGATCCCAGACGCCTCAAATGCCTACTCAAGCAATGTTCATGGC
TCCCGCTCAGATGGCATATCCCACAGCCTACCCCAGCTTCCCCGGGGTTACACCTCCTAACAGCATAATG
GGGAGCATGATGCCTCCACCAGTAGGCATGGTTGCTCAGCCAGGAGCTTCTGGGATGGTTGCCCCCATGG
CCATGCCTGCAGGCTATATGGGTGGCATGCAGGCATCAATGATGGGTGTGCCGAATGGAATGATGACCAC
CCAGCAGGCTGGCTACATGGCAGGCATGGCAGCTATGCCCCAGACTGTGTATGGGGTCCAGCCAGCTCAG
CAGCTGCAATGGAACCTTACTCAGATGACCCAGCAGATGGCTGGGATGAACTTCTATGGAGCCAATGGCA
TGATGAACTATGGACAGTCAATGAGTGGCGGAAATGGACAGGCAGCAAATCAGACTCTCAGTCCTCAGAT
GTGGAAATAA

Translation (399 aa):
MIFKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPET
FRRPQIDPAVEGFIRDKYEKKKYMDRSLDINAFRKEKDDKWKRGSEPVPEKKLEPVVFEKVKMPQKKEDP
QLPRKSSPKSTAPVMDLLGLDAPVACSIANSKTSNTLEKDLDLLASVPSPSSSGSRKVVGSMPTAGSAGS
VPENLNLFPEPGSKSEEIGKKQLSKDSILSLYGSQTPQMPTQAMFMAPAQMAYPTAYPSFPGVTPPNSIM
GSMMPPPVGMVAQPGASGMVAPMAMPAGYMGGMQASMMGVPNGMMTTQQAGYMAGMAAMPQTVYGVQPAQ
QLQWNLTQMTQQMAGMNFYGANGMMNYGQSMSGGNGQAANQTLSPQMWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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