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Report for CCDS55695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55695.1 Public Homo sapiens 1 OR2T29 24 110 108 CCDS HistoryNCBI Gene:343563Re-query CCDS DB by CCDS ID:55695.1Re-query CCDS DB by GeneID:343563See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55695.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328570.6 ENSP00000331774.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328570.6Link to Ensembl Protein Viewer:ENSP00000331774.3Re-query CCDS DB by Nucleotide ID:ENST00000328570Re-query CCDS DB by Protein ID:ENSP00000331774
Original member Current member EBI ENST00000641069.1 ENSP00000492895.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641069.1Link to Ensembl Protein Viewer:ENSP00000492895.1Re-query CCDS DB by Nucleotide ID:ENST00000641069Re-query CCDS DB by Protein ID:ENSP00000492895
Original member Current member NCBI NM_001004694.3 NP_001004694.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004694.3Link to Protein Sequence:NP_001004694.2Re-query CCDS DB by Nucleotide ID:NM_001004694Re-query CCDS DB by Protein ID:NP_001004694Link to BLAST:NP_001004694.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004694.2 315 Q8NH02 315 100% 0 0

Chromosomal Locations for CCDS 55695.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 248558544 248559491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGCCAACATCACCAGGATGGCCAACCACACTGGAAGGTTGGATTTCATCCTCATGGGACTCTTCAGAC
AATCCAAACATCCAGCTCTACTTAGTGTGGTCATCTTTGTGGTTTTCCTGAAGGCGTTGTCTGGAAATGC
TGTCCTGATCCTTCTGATACACTGTGACGCCCACCTCCACAGCCCCATGTACTTTTTCATCAGTCAATTG
TCTCTCATGGACATGGCGTACATTTCTGTCACTGTGCCCAAGATGCTCCTGGACCAGGTCATGGGTGTGA
ATAAGGTCTCAGCCCCTGAGTGTGGGATGCAGATGTTCCTCTATCTGACACTAGCAGGTTCGGAATTTTT
CCTTCTAGCCACCATGGCCTATGACCGCTACGTGGCCATCTGCCATCCTCTCCGTTACCCTGTCCTCATG
AACCATAGGGTCTGTCTTTTCCTGGCATCGGGCTGCTGGTTCCTGGGCTCAGTGGATGGCTTCATGCTCA
CTCCCATCACCATGAGCTTCCCCTTCTGCAGATCCTGGGAGATTCATCATTTCTTCTGTGAAGTCCCTGC
TGTAACGATCCTGTCCTGCTCAGACACCTCACTCTATGAGACCCTCATGTACCTATGCTGTGTCCTCATG
CTCCTCATCCCTGTGACGATCATTTCAAGCTCCTATTTACTCATCCTCCTCACCGTCCACAGGATGAACT
CAGCAGAGGGCCGGAAAAAGGCCTTTGCCACCTGCTCCTCCCACCTGACTGTGGTCATCCTCTTCTATGG
GGCTGCCGTCTACACCTACATGCTCCCCAGCTCCTACCACACCCCTGAGAAGGACATGATGGTATCTGTC
TTCTATACCATCCTCACTCCGGTGCTGAACCCTTTAATCTATAGTCTTAGGAATAAGGATGTCATGGGGG
CTCTGAAGAAAATGTTAACTGTGAGATTCGTCCTTTAG

Translation (315 aa):
MANITRMANHTGRLDFILMGLFRQSKHPALLSVVIFVVFLKALSGNAVLILLIHCDAHLHSPMYFFISQL
SLMDMAYISVTVPKMLLDQVMGVNKVSAPECGMQMFLYLTLAGSEFFLLATMAYDRYVAICHPLRYPVLM
NHRVCLFLASGCWFLGSVDGFMLTPITMSFPFCRSWEIHHFFCEVPAVTILSCSDTSLYETLMYLCCVLM
LLIPVTIISSSYLLILLTVHRMNSAEGRKKAFATCSSHLTVVILFYGAAVYTYMLPSSYHTPEKDMMVSV
FYTILTPVLNPLIYSLRNKDVMGALKKMLTVRFVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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