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Report for CCDS55733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55733.1 Public Homo sapiens 10 EDRF1 24 110 108 CCDS HistoryNCBI Gene:26098Re-query CCDS DB by CCDS ID:55733.1Re-query CCDS DB by GeneID:26098See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55733.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356792.9 ENSP00000349244.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356792.9Link to Ensembl Protein Viewer:ENSP00000349244.4Re-query CCDS DB by Nucleotide ID:ENST00000356792Re-query CCDS DB by Protein ID:ENSP00000349244
Original member Current member NCBI NM_001202438.2 NP_001189367.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001202438.2Link to Protein Sequence:NP_001189367.1Re-query CCDS DB by Nucleotide ID:NM_001202438Re-query CCDS DB by Protein ID:NP_001189367Link to BLAST:NP_001189367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001189367.1 1238 Q3B7T1-1 1238 100% 0 0

Chromosomal Locations for CCDS 55733.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 125719808 125719915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125721204 125721412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125723068 125723134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125723811 125723936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125725318 125725442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125725682 125725838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125729003 125729104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125729358 125729479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125730288 125730399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125733404 125733551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125733635 125733743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125734072 125734183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125735644 125735904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125737918 125737989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125738295 125738445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125740463 125740651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125741001 125741201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125743058 125743276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125745707 125745930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125747536 125747694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125747863 125748012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125749412 125749565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125752799 125752914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125753694 125753845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125763301 125763472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3717 nt):
ATGGGGGATGCCAAGGAGGCCGGAGCCGAGGGTCCGCCGGCCGGGGCCGCCGCTCGAGGAGGGCTCAGCC
TCCTGTCCCAGGGAGAATCCGAGGAATCTTCTGCACAGGGATCAGCTTTATTTCTTGGAGGCAATGAAGT
GAAGAGCCGAGCTGTGGTGAAATACTCTTCTGCCCCTCCTCGAACAGCATTTGCACGCCTTGAAGAGAAA
ACAGACTTGAAACTCCCACCTGCCAACTGGTTACGAGAGAGTGCCAAACTAGGGCCAGCAGGAACTACCA
TTCTTGGCAACAGCAAGAAAAGCAAGCCATTTTCAAGCTTTGGCATGGCATATGACTTTATTGATTCAGT
GGGAAATGATGTGGATGTTGTCTCTGACTCTGAAAACATAAAAAAACTCCTGAAAATTCCCTACAGCAAG
TCGCACGTGAGCATGGCAGTACACCGCATAGGAAGGACTCTCTTACTAGATGAGCTAGATATTCAAGAAC
TCTTTATGAGATCGTCTCAGACTGGTGACTGGACATGGTTGAAAGAGTTTTATCAAAGACTCATTGATCA
GAAGTGGCAGAGGAAGAAAAAGAGCAAAGAGCACTGGTATCAAAAGGCAATTCTTTCCAAGTTTTTATAT
TACAGTATCAATGGTGATGGAGCCGCTCAGCCTGTCTCATCCACCGCAGAACAGCAGGAATCGTCCAGTT
CAGATCAGACAAATGATTCGGAAGGGGCTTCATGGCCTGCTCCCTTCGAAATGCCTTCTTCAGTTTCTGA
AGATCCCAGTGCTTCCAGTCAGGGAAGTGAGCCTCTTGAACCCTCATACATAGTGGGGCATGTGGCCTCA
GCCCCCAAAGAACAAAACCTGATTACTTTATTCAATGACGGGGAGCACAGTCAGGGTCTTAAAAATGATT
TTGTTCGGAATATTCTATGGACATTTGAAGATATCCATATGTTGGTCGGCTCCAACATGCCCATATTTGG
AGGAGGCAGATACCCAGCAGTCAGCTTACGTCTCAGGGATAACAACAAACCAATTAATGTGCTAACTGGA
ATTGACTATTGGTTGGACAACTTGATATGCAATGTGCCAGAGCTTGTGATGTGTTTTCATGTAAATGGAA
TTGTACAGAAATATGAAATGATAAAGACAGAAGAAATTCCCAATTTGGAAAATTCTAATTTTTCTACTAA
AGTCATAAAAGACATTGCACAGAATATTTTATCATTTTTGAAATCTAATTGTACCAAAGAAGGACATACC
TATTGGCTCTTTAAAGCAAGTGGCAGCGATATAGTGAAGCTCTATGACCTCACTACTCTTTGTGAAGAAA
CTGAAGACAAATACCAAAATCCATTCACAATGCCGGTAGCCATTCTCTTGTACAAGGTTGCTTGCAACAT
GATGATGAAGAAGAATCAAAATAAGAAACACTATGGAACTATTAGAACATTGCTTCTTAATTGTCTGAAA
TTACTGGACAAAAGTAGGCATCCTCAAATTATTGCTTCCGCCAATTACATGCTTTCAGAACTTTTTCAAT
TGGATGAACCTAAAAAGGAAGAAAATTCAGAATCTCCTTTAAATGAGAATTCTGATGAAAGTTATAGTGA
AGAGGAGGAAGAGATGCCCGACAGTGATGAAAATGGATCCTATAGCACCAGCTCTGATCCATCAGATGAT
AGCAAAGCAGTAGCTATAATCAAGTCTGTTGGAGAACTATCAGTACCAGAAAAATACAAATCTATTCATC
AAATCAGACCCAGTTGTGCATTTCCAGTTTGCCATGACACAGAAGAGCGCTGTAGACTTGTGCTTAGCTA
TGTTCTAGAGGGTTTAAAATCTGTCGATAGCAGCATCAAAAAAGAAAGCGACCTTCCAGCAGCTGACCCC
AGCACTCCAATCCCGTTAAAATATGAAGATGAATCCTCAAGAGGGGGTCCCGAGGGGCTAGAGAAGCAGA
TGGCCTTGTTTTTGGACAAAATGGGCTCCCTTCAGAAGGGCAATTATTCCAGTCAATCTGGAATGATCCC
TGGCTCTTGGCAACATAAAATGAAACTTCAGCTGATTCTCAAGTCATCAAAGGCCTATTATGTTTTGTCC
GATGCTGCCATGAGTCTTCAGAAATACGGAAGAGCATTACGATACATTAAATTAGCTTTGCAAAGCCATG
ATACTTATTGCTGCCTCTGCACCAATATGCTTTCCGAAGTGCTGTTGTTTCTCTCTCAATATTTGACACT
TTGTGGTGATATCCAACTAATGCTGGCCCAGAATGCAAATAATAGAGCAGCACACCTTGAAGAGTTTCAT
TACCAAACAAAAGAAGACCAGGAGATCCTGCATAGCCTTCACAGAGAGTCCAGTTGCCAAGGATTTGCAT
GGGCAACTGATTTGTCTACAGACTTAGAAAGTCAACTCTCTGTTAGTTGTAAATGTTATGAGGCTGCTAA
TGAAATCTTGCAGTTTAGTGACTTGAAAAGCCAAAATCCAGAACACTATGTACAAGTATTAAAGAGAATG
GGTAACATTAGAAATGAAATTGGTGTGTTTTACATGAATCAGGCTGCTGCATTACAGAGTGAGAGACTAG
TGAGCAAATCTGTGTCTGCTGCCGAGCAACAGTTGTGGAAAAAAAGCTTTTCTTGTTTTGAAAAGGGAAT
TCACAACTTTGAATCAATTGAGGATGCCACCAATGCCGCCCTTTTATTATGTAACACGGGAAGGCTCATG
CGGATTTGTGCGCAGGCCCACTGTGGTGCAGGGGATGAACTGAAACGTGAATTTTCACCAGAAGAAGGCT
TGTATTATAATAAGGCTATTGATTACTATTTGAAAGCGCTAAGGTCATTGGGAACACGAGACATACACCC
AGCTGTTTGGGATTCAGTGAACTGGGAATTGTCCACTACTTACTTTACTATGGCAACTCTACAGCAAGAT
TATGCTCCGTTATCTAGAAAAGCTCAGGAGCAGATTGAGAAAGAAGTCAGTGAGGCCATGATGAAGTCCC
TAAAATACTGCGATGTGGATTCAGTGTCTGCTCGACAGCCCCTTTGTCAGTATCGAGCTGCAACCATCCA
TCACAGGCTGGCCTCCATGTACCACAGCTGTCTGAGGAATCAGGTTGGTGATGAACACCTTAGGAAACAA
CACCGGGTGCTGGCAGATCTTCATTACAGCAAGGCCGCAAAGCTGTTTCAGCTGCTGAAAGATGCTCCCT
GCGAACTGCTTAGAGTACAGCTAGAGAGAGTAGCATTTGCTGAATTTCAGATGACCAGTCAGAATAGCAA
TGTTGGAAAGTTGAAAACACTATCTGGGGCTCTTGATATAATGGTGAGAACTGAGCACGCATTCCAGCTT
ATCCAGAAGGAGCTTATAGAAGAATTTGGCCAGCCTAAGAGTGGTGACGCCGCTGCAGCTGCTGATGCTT
CTCCTAGTCTCAATCGAGAAGAAGTGATGAAACTCCTCAGTATATTTGAGTCTCGGTTGTCATTTCTTCT
CCTTCAGTCCATTAAACTGCTATCTTCAACTAAAAAGAAAACAAGCAATAACATCGAAGATGACACAATT
CTCAAAACCAACAAGCACATTTACTCCCAGCTTTTGAGAGCAACTGCAAATAAAACCGCGACTCTTCTGG
AAAGAATCAACGTTATCGTCCACCTGCTGGGCCAGCTTGCCGCCGGCAGTGCAGCGAGCAGCAATGCCGT
TCAGTGA

Translation (1238 aa):
MGDAKEAGAEGPPAGAAARGGLSLLSQGESEESSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEK
TDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSK
SHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLY
YSINGDGAAQPVSSTAEQQESSSSDQTNDSEGASWPAPFEMPSSVSEDPSASSQGSEPLEPSYIVGHVAS
APKEQNLITLFNDGEHSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTG
IDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHT
YWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCLK
LLDKSRHPQIIASANYMLSELFQLDEPKKEENSESPLNENSDESYSEEEEEMPDSDENGSYSTSSDPSDD
SKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADP
STPIPLKYEDESSRGGPEGLEKQMALFLDKMGSLQKGNYSSQSGMIPGSWQHKMKLQLILKSSKAYYVLS
DAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEFH
YQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRM
GNIRNEIGVFYMNQAAALQSERLVSKSVSAAEQQLWKKSFSCFEKGIHNFESIEDATNAALLLCNTGRLM
RICAQAHCGAGDELKREFSPEEGLYYNKAIDYYLKALRSLGTRDIHPAVWDSVNWELSTTYFTMATLQQD
YAPLSRKAQEQIEKEVSEAMMKSLKYCDVDSVSARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQ
HRVLADLHYSKAAKLFQLLKDAPCELLRVQLERVAFAEFQMTSQNSNVGKLKTLSGALDIMVRTEHAFQL
IQKELIEEFGQPKSGDAAAAADASPSLNREEVMKLLSIFESRLSFLLLQSIKLLSSTKKKTSNNIEDDTI
LKTNKHIYSQLLRATANKTATLLERINVIVHLLGQLAAGSAASSNAVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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