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Report for CCDS55776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55776.1 Public Homo sapiens 11 RBM4 24 110 108 CCDS HistoryNCBI Gene:5936Re-query CCDS DB by CCDS ID:55776.1Re-query CCDS DB by GeneID:5936See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55776.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398692.8 ENSP00000381680.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398692.8Link to Ensembl Protein Viewer:ENSP00000381680.4Re-query CCDS DB by Nucleotide ID:ENST00000398692Re-query CCDS DB by Protein ID:ENSP00000381680
Original member Current member EBI ENST00000530235.1 ENSP00000432150.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530235.1Link to Ensembl Protein Viewer:ENSP00000432150.1Re-query CCDS DB by Nucleotide ID:ENST00000530235Re-query CCDS DB by Protein ID:ENSP00000432150
Original member Current member NCBI NM_001198843.2 NP_001185772.1 Accepted alive Link to Nucleotide Sequence:NM_001198843.2Link to Protein Sequence:NP_001185772.1Re-query CCDS DB by Nucleotide ID:NM_001198843Re-query CCDS DB by Protein ID:NP_001185772Link to BLAST:NP_001185772.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185772.1 143 Q9BWF3-3 143 100% 0 0

Chromosomal Locations for CCDS 55776.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 66639712 66640123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 66646027 66646046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGTGAAGCTGTTCATCGGAAACCTGCCCCGGGAGGCTACAGAGCAGGAGATTCGCTCACTCTTCGAGC
AGTATGGGAAGGTGCTGGAATGTGACATCATTAAGAATTACGGCTTTGTGCACATAGAAGACAAGACGGC
AGCTGAGGATGCCATACGCAACCTGCACCATTACAAGCTTCATGGGGTGAACATCAACGTGGAAGCCAGC
AAGAATAAGAGCAAAACCTCAACAAAGTTGCATGTGGGCAACATCAGTCCCACCTGCACCAATAAGGAGC
TTCGAGCCAAGTTTGAGGAGTATGGTCCGGTCATCGAATGTGACATCGTGAAAGATTATGCCTTCGTACA
CATGGAGCGGGCAGAGGATGCAGTGGAGGCCATCAGGGGCCTTGATAACACAGAGTTTCAAGGTGGGATG
TGTGTGGGCTGA

Translation (143 aa):
MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS
KNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGGM
CVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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