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Report for CCDS55826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55826.1 Public Homo sapiens 12 LIMA1 24 110 108 CCDS HistoryNCBI Gene:51474Re-query CCDS DB by CCDS ID:55826.1Re-query CCDS DB by GeneID:51474See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55826.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000552783.5 ENSP00000448779.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552783.5Link to Ensembl Protein Viewer:ENSP00000448779.1Re-query CCDS DB by Nucleotide ID:ENST00000552783Re-query CCDS DB by Protein ID:ENSP00000448779
Original member Current member NCBI NM_001113547.2 NP_001107019.1 Accepted alive Link to Nucleotide Sequence:NM_001113547.2Link to Protein Sequence:NP_001107019.1Re-query CCDS DB by Nucleotide ID:NM_001113547Re-query CCDS DB by Protein ID:NP_001107019Link to BLAST:NP_001107019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107019.1 600 Q9UHB6-5 600 100% 0 0

Chromosomal Locations for CCDS 55826.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 50177064 50178069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50181904 50182037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50192452 50192564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50195830 50195887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50200777 50200884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50204552 50204700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50205984 50206068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 50222021 50222170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGGAAAATTGTCTAGGAGAATCCAGGCATGAAGTAGAAAAATCAGAAATCAGTGAAAACACAGATGCTT
CGGGCAAAATAGAGAAATATAATGTTCCGCTGAACAGGCTTAAGATGATGTTTGAGAAAGGTGAACCAAC
TCAAACTAAGATTCTCCGGGCCCAAAGCCGAAGTGCAAGTGGAAGGAAGATCTCTGAAAACAGCTATTCT
CTAGATGACCTGGAAATAGGCCCAGGTCAGTTGTCATCTTCTACATTTGACTCGGAGAAAAATGAGAGTA
GACGAAATCTGGAACTTCCACGCCTCTCAGAAACCTCTATAAAGGATCGAATGGCCAAGTACCAGGCAGC
TGTGTCCAAACAAAGCAGCTCAACCAACTATACAAATGAGCTGAAAGCCAGTGGTGGCGAAATCAAAATT
CATAAAATGGAGCAAAAGGAGAATGTGCCCCCAGGTCCTGAGGTCTGCATCACCCATCAGGAAGGGGAAA
AGATTTCTGCAAATGAGAATAGCCTGGCAGTCCGTTCCACCCCTGCCGAAGATGACTCCCCAGGTGACTC
CCAGGTTAAGAGTGAGGTTCAACAGCCTGTCCATCCCAAGCCACTAAGTCCAGATTCCAGAGCCTCCAGT
CTTTCTGAAAGTTCTCCTCCCAAAGCAATGAAGAAGTTTCAGGCACCTGCAAGAGAGACCTGCGTGGAAT
GTCAGAAGACAGTCTATCCAATGGAGCGTCTCTTGGCCAACCAGCAGGTGTTTCACATCAGCTGCTTCCG
TTGCTCCTATTGCAACAACAAACTCAGTCTAGGAACATATGCATCTTTACATGGAAGAATCTATTGTAAG
CCTCACTTCAATCAACTCTTTAAATCTAAGGGCAACTATGATGAAGGCTTTGGGCACAGACCACACAAGG
ATCTATGGGCAAGCAAAAATGAAAACGAAGAGATTTTGGAGAGACCAGCCCAGCTTGCAAATGCAAGGGA
GACCCCTCACAGCCCAGGGGTAGAAGATGCCCCTATTGCTAAGGTGGGTGTCCTGGCTGCAAGTATGGAA
GCCAAGGCCTCCTCTCAGCAGGAGAAGGAAGACAAGCCAGCTGAAACCAAGAAGCTGAGGATCGCCTGGC
CACCCCCCACTGAACTTGGAAGTTCAGGAAGTGCCTTGGAGGAAGGGATCAAAATGTCAAAGCCCAAATG
GCCTCCTGAAGACGAAATCAGCAAGCCCGAAGTTCCTGAGGATGTCGATCTAGATCTGAAGAAGCTAAGA
CGATCTTCTTCACTGAAGGAAAGAAGCCGCCCATTCACTGTAGCAGCTTCATTTCAAAGCACCTCTGTCA
AGAGCCCAAAAACTGTGTCCCCACCTATCAGGAAAGGCTGGAGCATGTCAGAGCAGAGTGAAGAGTCTGT
GGGTGGAAGAGTTGCAGAAAGGAAACAAGTGGAAAATGCCAAGGCTTCTAAGAAGAATGGGAATGTGGGA
AAAACAACCTGGCAAAACAAAGAATCTAAAGGAGAGACAGGGAAGAGAAGTAAGGAAGGTCATAGTTTGG
AGATGGAGAATGAGAATCTTGTAGAAAATGGTGCAGACTCCGATGAAGATGATAACAGCTTCCTCAAACA
ACAATCTCCACAAGAACCCAAGTCTCTGAATTGGTCGAGTTTTGTAGACAACACCTTTGCTGAAGAATTC
ACTACTCAGAATCAGAAATCCCAGGATGTGGAACTCTGGGAGGGAGAAGTGGTCAAAGAGCTCTCTGTGG
AAGAACAGATAAAGAGAAATCGGTATTATGATGAGGATGAGGATGAAGAGTGA

Translation (600 aa):
MENCLGESRHEVEKSEISENTDASGKIEKYNVPLNRLKMMFEKGEPTQTKILRAQSRSASGRKISENSYS
LDDLEIGPGQLSSSTFDSEKNESRRNLELPRLSETSIKDRMAKYQAAVSKQSSSTNYTNELKASGGEIKI
HKMEQKENVPPGPEVCITHQEGEKISANENSLAVRSTPAEDDSPGDSQVKSEVQQPVHPKPLSPDSRASS
LSESSPPKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCK
PHFNQLFKSKGNYDEGFGHRPHKDLWASKNENEEILERPAQLANARETPHSPGVEDAPIAKVGVLAASME
AKASSQQEKEDKPAETKKLRIAWPPPTELGSSGSALEEGIKMSKPKWPPEDEISKPEVPEDVDLDLKKLR
RSSSLKERSRPFTVAASFQSTSVKSPKTVSPPIRKGWSMSEQSEESVGGRVAERKQVENAKASKKNGNVG
KTTWQNKESKGETGKRSKEGHSLEMENENLVENGADSDEDDNSFLKQQSPQEPKSLNWSSFVDNTFAEEF
TTQNQKSQDVELWEGEVVKELSVEEQIKRNRYYDEDEDEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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