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Report for CCDS56191.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56191.1 Public Homo sapiens 20 RIMS4 24 110 108 CCDS HistoryNCBI Gene:140730Re-query CCDS DB by CCDS ID:56191.1Re-query CCDS DB by GeneID:140730See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56191.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541604.2 ENSP00000439287.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541604.2Link to Ensembl Protein Viewer:ENSP00000439287.1Re-query CCDS DB by Nucleotide ID:ENST00000541604Re-query CCDS DB by Protein ID:ENSP00000439287
Original member Current member NCBI NM_001205317.2 NP_001192246.1 Accepted alive Link to Nucleotide Sequence:NM_001205317.2Link to Protein Sequence:NP_001192246.1Re-query CCDS DB by Nucleotide ID:NM_001205317Re-query CCDS DB by Protein ID:NP_001192246Link to BLAST:NP_001192246.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192246.1 270 Q9H426-2 270 100% 0 0

Chromosomal Locations for CCDS 56191.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 44756134 44756352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44756898 44757037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44757670 44757771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44758072 44758184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44771275 44771416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44810175 44810271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGGAGCGCTCGCAGAGCCGCCTCAGTCTGTCCGCCTCCTTCGAGGCGCTCGCCATCTACTTCCCGTGCA
TGAACTCCTTCGACGACGAGGACGCAGAAGGGGACAGCCGGAGGCTGAAGGGGGCCATCCAGAGGAGCAC
GGAGACGGGCCTGGCAGTGGAGATGCCCAGCCGGACACTGCGCCAGGCCAGCCACGAGTCCATTGAGGAC
AGCATGAACAGCTATGGCTCAGAGGGCAACCTTAACTATGGAGGAGTTTGCCTGGCGTCGGACGCCCAGT
TCAGTGACTTCCTGGGAAGCATGGGGCCGGCACAGTTTGTGGGCCGCCAGACCCTGGCCACCACACCCAT
GGGGGATGTGGAGATCGGTCTGCAGGAGCGGAACGGTCAGTTGGAGGTGGACATTATCCAGGCTCGGGGA
CTGACAGCCAAGCCAGGCTCCAAGACACTGCCAGCGGCCTACATCAAGGCCTACCTGCTAGAGAATGGCA
TCTGCATTGCCAAGAAGAAGACCAAAGTCGCTCGCAAGTCGCTGGACCCACTGTATAACCAGGTGCTGCT
GTTTCCTGAGAGTCCCCAGGGCAAAGTCCTCCAGGTGATCGTGTGGGGGAACTACGGGCGGATGGAGCGG
AAGCAGTTCATGGGTGTGGCTCGCGTGCTGCTGGAGGAGCTGGACTTGACCACCCTGGCCGTGGGCTGGT
ACAAGCTCTTCCCCACCTCCTCCATGGTGGACCCAGCCACAGGCCCCCTGCTCCGGCAGGCATCCCAGTT
GTCCCTCGAGAGCACCGTGGGGCCCTGCGGAGAACGATCTTAG

Translation (270 aa):
MERSQSRLSLSASFEALAIYFPCMNSFDDEDAEGDSRRLKGAIQRSTETGLAVEMPSRTLRQASHESIED
SMNSYGSEGNLNYGGVCLASDAQFSDFLGSMGPAQFVGRQTLATTPMGDVEIGLQERNGQLEVDIIQARG
LTAKPGSKTLPAAYIKAYLLENGICIAKKKTKVARKSLDPLYNQVLLFPESPQGKVLQVIVWGNYGRMER
KQFMGVARVLLEELDLTTLAVGWYKLFPTSSMVDPATGPLLRQASQLSLESTVGPCGERS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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