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Report for CCDS56239.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56239.1 Public Homo sapiens 3 CIDEC 24 110 108 CCDS HistoryNCBI Gene:63924Re-query CCDS DB by CCDS ID:56239.1Re-query CCDS DB by GeneID:63924See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56239.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000430427.6 ENSP00000408631.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000430427.6Link to Ensembl Protein Viewer:ENSP00000408631.1Re-query CCDS DB by Nucleotide ID:ENST00000430427Re-query CCDS DB by Protein ID:ENSP00000408631
Original member Current member EBI ENST00000618572.4 ENSP00000483641.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618572.4Link to Ensembl Protein Viewer:ENSP00000483641.1Re-query CCDS DB by Nucleotide ID:ENST00000618572Re-query CCDS DB by Protein ID:ENSP00000483641
Original member Current member NCBI NM_001199551.2 NP_001186480.1 Accepted alive Link to Nucleotide Sequence:NM_001199551.2Link to Protein Sequence:NP_001186480.1Re-query CCDS DB by Nucleotide ID:NM_001199551Re-query CCDS DB by Protein ID:NP_001186480Link to BLAST:NP_001186480.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186480.1 248 Q96AQ7-4 248 100% 0 0

Chromosomal Locations for CCDS 56239.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9867134 9867296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9869882 9870069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9870164 9870322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9870445 9870474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9877066 9877219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9878434 9878486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGAATACGCCATGAAGTCCCTTAGCCTTCTCTACCCCAAGTCCCTCTCCAGGCATGTGTCAGTGCGTA
CCTCTGTGGTGACCCAGCAGCTGCTGTCGGAGCCCAGCCCCAAGGCCCCCAGGGCCCGGCCCTGCCGCGT
AAGCACGGCGGATCGAAGCGTGAGGAAGGGCATCATGGCTTACAGTCTTGAGGACCTCCTCCTCAAGACT
AGGAACCCTGAAGCCAGGAGCCAAGAGGTCCGGGACACTCTGATGCTGGCAGACAAGCCCTTCTTCCTGG
TGCTGGAGGAAGATGGCACAACTGTAGAGACAGAAGAGTACTTCCAAGCCCTGGCAGGGGATACAGTGTT
CATGGTCCTCCAGAAGGGGCAGAAATGGCAGCCCCCATCAGAACAGGGGACAAGGCACCCACTGTCCCTC
TCCCATAAGCCTGCCAAGAAGATTGATGTGGCCCGTGTAACGTTTGATCTGTACAAGCTGAACCCACAGG
ACTTCATTGGCTGCCTGAACGTGAAGGCGACTTTTTATGATACATACTCCCTTTCCTATGATCTGCACTG
CTGTGGGGCCAAGCGCATCATGAAGGAAGCTTTCCGCTGGGCCCTCTTCAGCATGCAGGCCACAGGCCAC
GTACTGCTTGGCACCTCCTGTTACCTGCAGCAGCTCCTCGATGCTACGGAGGAAGGGCAGCCCCCCAAGG
GCAAGGCCTCATCCCTTATCCCGACCTGTCTGAAGATACTGCAGTGA

Translation (248 aa):
MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMAYSLEDLLLKT
RNPEARSQEVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPSEQGTRHPLSL
SHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGAKRIMKEAFRWALFSMQATGH
VLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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