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Report for CCDS56396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56396.1 Public Homo sapiens 6 SMIM13 24 110 108 CCDS HistoryNCBI Gene:221710Re-query CCDS DB by CCDS ID:56396.1Re-query CCDS DB by GeneID:221710See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56396.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000416247.4 ENSP00000451866.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000416247.4Link to Ensembl Protein Viewer:ENSP00000451866.1Re-query CCDS DB by Nucleotide ID:ENST00000416247Re-query CCDS DB by Protein ID:ENSP00000451866
Original member Current member EBI ENST00000376935.4 ENSP00000452219.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376935.4Link to Ensembl Protein Viewer:ENSP00000452219.1Re-query CCDS DB by Nucleotide ID:ENST00000376935Re-query CCDS DB by Protein ID:ENSP00000452219
Original member Current member NCBI NM_001135575.2 NP_001129047.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135575.2Link to Protein Sequence:NP_001129047.1Re-query CCDS DB by Nucleotide ID:NM_001135575Re-query CCDS DB by Protein ID:NP_001129047Link to BLAST:NP_001129047.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129047.1 91 P0DJ93 91 100% 0 0

Chromosomal Locations for CCDS 56396.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 11094314 11094389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 11134403 11134602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (276 nt):
ATGTGGCACAGCGTCGGGCTGACTCTGCTTGTGTTCGTGGCCACGCTGCTGATCGTCCTGCTGCTGATGG
TGTGCGGTTGGTATTTTGTATGGCATCTTTTTTTATCAAAATTCAAGTTTCTCCGGGAACTGGTGGGAGA
CACAGGATCCCAAGAGGGAGATCATGAGCCTTCAGGGTCTGAAACTGAAGAAGACACTTCCTCCTCTCCA
CACAGAATCAGATCCGCTCGCCAAAGGAGGGCACCTGCTGATGAAGGCCACAGACCCCTGACATAG

Translation (91 aa):
MWHSVGLTLLVFVATLLIVLLLMVCGWYFVWHLFLSKFKFLRELVGDTGSQEGDHEPSGSETEEDTSSSP
HRIRSARQRRAPADEGHRPLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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