CCDS Report for Consensus CDS

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Report for CCDS56548.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
56548.1	Public	Homo sapiens	8	OXR1	24	110	108

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56548.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000442977.6	ENSP00000405424.2		Accepted	alive
		NCBI	NM_001198532.1	NP_001185461.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001185461.1	874	Q8N573-1	874	100%	0	0

Chromosomal Locations for CCDS 56548.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)

Genome Browser links:

Chromosome	Start	Stop
8	106448023	106448048
8	106518943	106519139
8	106679210	106679292
8	106683199	106683306
8	106684246	106684359
8	106692728	106692877
8	106702906	106703090
8	106706382	106707145
8	106710622	106710790
8	106713823	106713985
8	106737520	106737600
8	106739458	106739583
8	106740343	106740495
8	106742222	106742317
8	106745789	106745862
8	106750806	106750941

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2625 nt):
ATGACGAAGGACAAAAACAGCCCAGGGCTGAAGAAAAAGTCCCAGTCGGTGGATATTAATGCTCCAGGGT TCAACCCTTTGGCTGGTGCAGGAAAGCAAACACCACAAGCCAGTAAGCCCCCGGCACCCAAGACCCCCAT CATTGAAGAAGAGCAGAACAATGCAGCAAATACTCAGAAACATCCTTCCAGAAGGAGCGAACTGAAGAGG TTCTACACAATTGACACTGGCCAAAAGAAGACCCTAGACAAGAAAGATGGAAGACGAATGTCTTTTCAGA AACCTAAAGGGACTATTGAGTATACTGTTGAATCAAGGGATTCTTTGAATAGCATAGCCCTGAAGTTTGA TACAACACCTAACGAACTTGTTCAATTAAATAAGTTATTCTCCCGAGCAGTTGTTACTGGACAGGTTCTG TATGTTCCTGATCCTGAATATGTCTCCAGTGTTGAGAGCTCTCCATCTCTAAGCCCCGTAAGTCCTCTGT CACCAACATCATCTGAGGCTGAATTTGATAAGACCACTAATCCTGATGTCCATCCAACAGAAGCAACTCC CTCATCTACTTTCACTGGTATTCGACCTGCACGAGTTGTATCTTCAACTTCTGAGGAGGAGGAAGCATTT ACTGAGAAATTTCTTAAAATTAATTGCAAATATATTACCAGTGGCAAGGGCACAGTCAGTGGTGTGCTGC TAGTTACACCAAATAATATAATGTTTGATCCACATAAAAATGACCCTTTGGTTCAAGAGAATGGCTGTGA GGAATATGGCATCATGTGTCCAATGGAAGAGGTGATGTCAGCTGCAATGTACAAAGAAATTTTGGATAGC AAAATAAAGGAATCTTTACCCATAGATATAGATCAGCTATCAGGAAGGGACTTCTGCCATTCAAAGAAAA TGACAGGAAGTAACACTGAGGAAATAGACTCAAGAATCCGAGATGCAGGTAATGATAGTGCCAGCACTGC TCCTAGGAGCACTGAGGAGTCTCTTTCTGAAGATGTGTTCACAGAATCAGAACTTTCCCCTATACGAGAG GAGCTTGTATCTTCAGATGAACTGCGACAAGATAAATCTTCTGGTGCGTCATCAGAATCTGTGCAAACTG TCAATCAGGCTGAAGTAGAAAGTCTGACAGTCAAATCAGAATCTACTGGTACTCCTGGTCACTTAAGATC TGATACTGAACATTCTACAAATGAAGTTGGGACTTTATGTCATAAAACTGATTTAAATAATCTTGAAATG GCCATTAAGGAAGATCAGATTGCAGATAACTTTCAAGGAATATCAGGTCCTAAAGAAGACAGCACAAGTA TAAAAGGTAATTCAGACCAGGATTCTTTTCTTCATGAGAATTCGTTACACCAAGAAGAGAGTCAAAAAGA AAATATGCCTTGTGGGGAAACAGCAGAATTTAAACAAAAGCAAAGTGTTAACAAAGGAAAACAAGGAAAG GAGCAAAATCAGGACTCACAGACAGAGGCAGAAGAGCTACGCAAACTTTGGAAAACCCATACTATGCAAC AAACTAAACAGCAAAGGGAAAATATTCAACAAGTGTCACAAAAAGAAGCTAAGCATAAAATTACATCTGC TGATGGACACATAGAAAGTTCTGCACTTTTAAAAGAAAAGCAAAGGCATCGATTACATAAGTTCTTGTGT CTCAGAGTTGGAAAACCAATGAGGAAAACGTTTGTATCTCAAGCAAGTGCTACAATGCAACAGTATGCAC AGAGAGATAAGAAACATGAATATTGGTTTGCTGTGCCACAAGAAAGGACAGATCACTTGTATGCCTTCTT CATTCAGTGGAGTCCAGAAATATATGCAGAAGATACTGGCGAATATACCAGAGAACCTGGATTTATAGTA GTAAAAAAGATTGAGGAGTCTGAAACAATTGAGGATTCTAGTAATCAAGCAGCAGCCAGAGAATGGGAGG TAGTGTCAGTGGCTGAGTATCACCGCAGGATCGATGCTCTAAATACTGAAGAACTGCGCACACTCTGCAG ACGCCTCCAGATTACTACAAGGGAAGACATAAATTCAAAGCAGGTTGCTACAGTGAAAGCAGACCTGGAG TCTGAATCTTTTCGACCAAACCTAAGTGATCCCAGTGAACTTTTACTGCCAGATCAAATTGAAAAGCTTA CCAAGCATCTTCCACCAAGAACAATTGGCTATCCATGGACTCTTGTTTATGGTACTGGAAAACATGGCAC AAGCTTGAAAACTCTTTATCGAACAATGACAGGTTTAGACACCCCAGTGCTGATGGTGATTAAAGACAGT GATGGACAGGTTTTTGGTGCGTTAGCATCTGAGCCACTGAAAGTGAGTGATGGCTTTTATGGTACTGGAG AGACCTTTGTTTTTACATTCTGTCCGGAGTTTGAGGTCTTTAAGTGGACAGGAGATAATATGTTTTTTAT CAAAGGAGACATGGATTCACTAGCTTTCGGTGGTGGAGGAGGAGAATTTGCGCTTTGGCTTGATGGAGAT CTCTACCATGGAAGAAGCCATTCTTGTAAAACGTTTGGGAATCGTACACTTTCTAAGAAGGAAGATTTCT TTATCCAAGATATTGAAATCTGGGCTTTTGAATAA
Translation (874 aa):
MTKDKNSPGLKKKSQSVDINAPGFNPLAGAGKQTPQASKPPAPKTPIIEEEQNNAANTQKHPSRRSELKR FYTIDTGQKKTLDKKDGRRMSFQKPKGTIEYTVESRDSLNSIALKFDTTPNELVQLNKLFSRAVVTGQVL YVPDPEYVSSVESSPSLSPVSPLSPTSSEAEFDKTTNPDVHPTEATPSSTFTGIRPARVVSSTSEEEEAF TEKFLKINCKYITSGKGTVSGVLLVTPNNIMFDPHKNDPLVQENGCEEYGIMCPMEEVMSAAMYKEILDS KIKESLPIDIDQLSGRDFCHSKKMTGSNTEEIDSRIRDAGNDSASTAPRSTEESLSEDVFTESELSPIRE ELVSSDELRQDKSSGASSESVQTVNQAEVESLTVKSESTGTPGHLRSDTEHSTNEVGTLCHKTDLNNLEM AIKEDQIADNFQGISGPKEDSTSIKGNSDQDSFLHENSLHQEESQKENMPCGETAEFKQKQSVNKGKQGK EQNQDSQTEAEELRKLWKTHTMQQTKQQRENIQQVSQKEAKHKITSADGHIESSALLKEKQRHRLHKFLC LRVGKPMRKTFVSQASATMQQYAQRDKKHEYWFAVPQERTDHLYAFFIQWSPEIYAEDTGEYTREPGFIV VKKIEESETIEDSSNQAAAREWEVVSVAEYHRRIDALNTEELRTLCRRLQITTREDINSKQVATVKADLE SESFRPNLSDPSELLLPDQIEKLTKHLPPRTIGYPWTLVYGTGKHGTSLKTLYRTMTGLDTPVLMVIKDS DGQVFGALASEPLKVSDGFYGTGETFVFTFCPEFEVFKWTGDNMFFIKGDMDSLAFGGGGGEFALWLDGD LYHGRSHSCKTFGNRTLSKKEDFFIQDIEIWAFE

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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