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Report for CCDS56575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56575.1 Public Homo sapiens 9 CCDC107 24 110 108 CCDS HistoryNCBI Gene:203260Re-query CCDS DB by CCDS ID:56575.1Re-query CCDS DB by GeneID:203260See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56575.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378407.7 ENSP00000367662.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378407.7Link to Ensembl Protein Viewer:ENSP00000367662.3Re-query CCDS DB by Nucleotide ID:ENST00000378407Re-query CCDS DB by Protein ID:ENSP00000367662
Original member Current member NCBI NM_001195217.2 NP_001182146.1 Accepted alive Link to Nucleotide Sequence:NM_001195217.2Link to Protein Sequence:NP_001182146.1Re-query CCDS DB by Nucleotide ID:NM_001195217Re-query CCDS DB by Protein ID:NP_001182146Link to BLAST:NP_001182146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182146.1 139 Q8WV48-3 139 100% 0 0

Chromosomal Locations for CCDS 56575.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35658380 35658485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35658576 35658727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35660401 35660461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35660557 35660647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35660774 35660783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGCGGGCGCAGTTTCGCTCTTGGGTGTGGTGGGGCTGCTGCTTGTGTCTGCGCTGTCCGGGGTCCTAG
GAGACCGCGCCAATCCCGACCTCCGGGCACACCCAGGGAACGCAGCCCACCCCGGCTCTGGAGCCACGGA
ACCCCGGCGGCGACCACCGCTCAAGGATCAACGCGAGCGGACCCGGGCCGGGTCGCTGCCTCTGGGGGCG
CTGTACACCGCGGCCGTCGCGGCTTTTGTGCTGTACAAGTGTTTGCAGGGGAAAGATGAAACTGCGGTTC
TCCACGAGGAGGCAAGCAAGCAGCAGCCACTGCAGTCAGAGCAACAGCTGGCCCAGTTGACACAACAGCT
GGCCCAGACAGAGCAGCACCTGAACAACCTGATGGCCCAGCTGGACCCCCTTTTTGAGCGGAGCTTCTGA

Translation (139 aa):
MAGAVSLLGVVGLLLVSALSGVLGDRANPDLRAHPGNAAHPGSGATEPRRRPPLKDQRERTRAGSLPLGA
LYTAAVAAFVLYKCLQGKDETAVLHEEASKQQPLQSEQQLAQLTQQLAQTEQHLNNLMAQLDPLFERSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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