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Report for CCDS56603.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56603.1 Public Homo sapiens X EDA2R 24 110 108 CCDS HistoryNCBI Gene:60401Re-query CCDS DB by CCDS ID:56603.1Re-query CCDS DB by GeneID:60401See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56603.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253392.5 ENSP00000253392.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000253392.5Link to Ensembl Protein Viewer:ENSP00000253392.5Re-query CCDS DB by Nucleotide ID:ENST00000253392Re-query CCDS DB by Protein ID:ENSP00000253392
Original member Current member EBI ENST00000396050.5 ENSP00000379365.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396050.5Link to Ensembl Protein Viewer:ENSP00000379365.2Re-query CCDS DB by Nucleotide ID:ENST00000396050Re-query CCDS DB by Protein ID:ENSP00000379365
Original member Current member NCBI NM_001242310.1 NP_001229239.1 Accepted alive Link to Nucleotide Sequence:NM_001242310.1Link to Protein Sequence:NP_001229239.1Re-query CCDS DB by Nucleotide ID:NM_001242310Re-query CCDS DB by Protein ID:NP_001229239Link to BLAST:NP_001229239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229239.1 318 Q9HAV5-2 318 99.6855% 0 1

Chromosomal Locations for CCDS 56603.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 66599484 66599866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 66600039 66600095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 66602633 66602797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 66604421 66604506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 66605048 66605226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 66615934 66616020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGGATTGCCAAGAAAATGAGTACTGGGACCAATGGGGACGGTGTGTCACCTGCCAACGGTGTGGTCCTG
GACAGGAGCTATCCAAGGATTGTGGTTATGGAGAGGGTGGAGATGCCTACTGCACAGCCTGCCCTCCTCG
CAGGTACAAAAGCAGCTGGGGCCACCACAGATGTCAGAGTTGCATCACCTGTGCTGTCATCAATCGTGTT
CAGAAGGTCAACTGCACAGCTACCTCTAATGCTGTCTGTGGGGACTGTTTGCCCAGGTTCTACCGAAAGA
CACGCATTGGAGGCCTGCAGGACCAAGAGTGCATCCCGTGCACGAAGCAGACCCCCACCTCTGAGGTTCA
ATGTGCCTTCCAGTTGAGCTTAGTGGAGGCAGATACACCCACAGTGCCCCCTCAGGAGGCCACACTTGTT
GCACTGGTGAGCAGCCTGCTAGTGGTGTTTACCCTGGCCTTCCTGGGGCTCTTCTTCCTCTACTGCAAGC
AGTTCTTCAACAGACATTGCCAGCGTGAGAAATTGATTATTTTCTCTGATCCAGTACCAGCTAGCCTCAA
TCTGATACCTGAATTTGCAGGAGGTTTGCTGCAGTTTGAGGCTGATAAAACAGCAAAGGAGGAATCTCTC
TTCCCCGTGCCACCCAGCAAGGAGACCAGTGCTGAGTCCCAAGTGAGTGAGAACATCTTTCAGACCCAGC
CACTTAACCCTATCCTCGAGGACGACTGCAGCTCGACTAGTGGCTTCCCCACACAGGAGTCCTTTACCAT
GGCCTCCTGCACCTCAGAGAGCCACTCCCACTGGGTCCACAGCCCCATCGAATGCACAGAGCTGGACCTG
CAAAAGTTTTCCAGCTCTGCCTCCTATACTGGAGCTGAGACCTTGGGGGGAAACACAGTCGAAAGCACTG
GAGACAGGCTGGAGCTCAATGTGCCCTTTGAAGTTCCCAGCCCTTAA

Translation (318 aa):
MDCQENEYWDQWGRCVTCQRCGPGQELSKDCGYGEGGDAYCTACPPRRYKSSWGHHRCQSCITCAVINRV
QKVNCTATSNAVCGDCLPRFYRKTRIGGLQDQECIPCTKQTPTSEVQCAFQLSLVEADTPTVPPQEATLV
ALVSSLLVVFTLAFLGLFFLYCKQFFNRHCQREKLIIFSDPVPASLNLIPEFAGGLLQFEADKTAKEESL
FPVPPSKETSAESQVSENIFQTQPLNPILEDDCSSTSGFPTQESFTMASCTSESHSHWVHSPIECTELDL
QKFSSSASYTGAETLGGNTVESTGDRLELNVPFEVPSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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