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Report for CCDS56685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56685.1 Public Mus musculus 10 Rgs17 23 108 98 CCDS HistoryNCBI Gene:56533Re-query CCDS DB by CCDS ID:56685.1Re-query CCDS DB by GeneID:56533See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56685.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117676.7 ENSMUSP00000113519.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117676.7Link to Ensembl Protein Viewer:ENSMUSP00000113519.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117676Re-query CCDS DB by Protein ID:ENSMUSP00000113519
Original member Current member EBI ENSMUST00000131996.7 ENSMUSP00000116291.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131996.7Link to Ensembl Protein Viewer:ENSMUSP00000116291.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131996Re-query CCDS DB by Protein ID:ENSMUSP00000116291
Original member Current member NCBI NM_019958.4 NP_064342.1 Accepted alive Link to Nucleotide Sequence:NM_019958.4Link to Protein Sequence:NP_064342.1Re-query CCDS DB by Nucleotide ID:NM_019958Re-query CCDS DB by Protein ID:NP_064342Link to BLAST:NP_064342.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064342.1 210 Q9QZB0 210 100% 0 0

Chromosomal Locations for CCDS 56685.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 5832953 5833141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5841272 5841506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5842536 5842625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5862519 5862637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGAGAAAACGGCAGCAGTCACAAAATGAAGGAACACAGGCTGTGTCTCAAGCGCCTGGAAACCAAAGGC
CCAACAATACCTGCTGCTTCTGCTGGTGCTGTTGCTGCAGCTGCTCCTGCCTCACTGTCAGGAATGAGGA
AAGAGGAGACTCTTCGGGGAGATCCCCACATACCACCAAAATGGAGAGCATCCAGGTCCTAGAGGAATGC
CAAAACCCCACTGCAGATGAAGTCTTGTCCTGGTCTCAGAATTTTGACAAGATGATGAAGACTCCTGCAG
GAAGAAACCTTTTCCGAGAGTTCCTCCGAACGGAGTACAGTGAAGAGAACCTACTCTTCTGGCTGGCCTG
TGAAGACTTAAAGAAGGAGCAGAACAAAAAGGCTGTTGAAGAAAAGGCCAGGATGATATACGAGGATTAC
ATTTCTATACTGTCACCGAAAGAGGTCAGCCTGGATTCTCGAGTTAGAGAGGTGATCAACAGGAGTCTGC
TGGACCCCAGCCCACACATGTATGAAGACGCCCAGCTTCAGATCTACACCCTAATGCACAGAGATTCTTT
CCCAAGATTCTTGAACTCACAGATCTATAAAGCTTTTGTGGAAAGTACCACCAGCTGTACTTCTGAATCC
TAA

Translation (210 aa):
MRKRQQSQNEGTQAVSQAPGNQRPNNTCCFCWCCCCSCSCLTVRNEERGDSSGRSPHTTKMESIQVLEEC
QNPTADEVLSWSQNFDKMMKTPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKAVEEKARMIYEDY
ISILSPKEVSLDSRVREVINRSLLDPSPHMYEDAQLQIYTLMHRDSFPRFLNSQIYKAFVESTTSCTSES


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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