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Report for CCDS56789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56789.1 Public Mus musculus 11 Inca1 23 108 98 CCDS HistoryNCBI Gene:103844Re-query CCDS DB by CCDS ID:56789.1Re-query CCDS DB by GeneID:103844See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108543.3 ENSMUSP00000104183.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108543.3Link to Ensembl Protein Viewer:ENSMUSP00000104183.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108543Re-query CCDS DB by Protein ID:ENSMUSP00000104183
Original member NCBI NM_001252485.1 NP_001239414.1 Updated not alive Link to Nucleotide Sequence:NM_001252485.1Link to Protein Sequence:NP_001239414.1Re-query CCDS DB by Nucleotide ID:NM_001252485Re-query CCDS DB by Protein ID:NP_001239414
Current member NCBI NM_001252485.2 NP_001239414.1 Accepted alive Link to Nucleotide Sequence:NM_001252485.2Link to Protein Sequence:NP_001239414.1Re-query CCDS DB by Nucleotide ID:NM_001252485Re-query CCDS DB by Protein ID:NP_001239414Link to BLAST:NP_001239414.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239414.1 196 Q6PKN7-2 196 100% 0 0

Chromosomal Locations for CCDS 56789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70688606 70688749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70688985 70689144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70689746 70689939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70690183 70690222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70690439 70690491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGCCTCAGCCGTATGGAGATGCCTTCTGGGAGAATCTTAGCCAAAGGTCTAGCTCCAATTGGATGGTAG
AACAGTACATTCCACCAATTCTGAGGGCCACTGATTGCTCCCGGCCTAGCCTGCACCCTCTTGAGGGGCT
CCCTCCTCCTGAGAAGCTTTGGAGAAGAAAGAGAAAGAAGCTGCATTTGGAAAGAATGCAGAAGGGACCT
GGAAGCATTCCAGCCCGAGTTAGAGCAGTTACTTATCATCTGGAGGACCTGAGAAGGCGCCAGGGAATCA
TCAATGAACTGAAGAGGGCCCAGTGGGGCAGCTCTGATGCTACACCTGAACTTCCAGCACTTGAAGAGGG
CTTTGAACTCCTAAGCACTACAAAATACTTTGACGTGGAAGAAGAGAGGGCAACCTATCCACAGAAAGAG
ACTTATTCTGTCACTCCCAGAGATCAGCTGCTTTGGACTCCCTGGACTCCTGTAGGCCAGCAGGGGACTT
ATGCCTCTGGGCAGCTAAGCTCTTTGACCTACAGCACTGCTACAGCCAGAAAGAACCCCGTTTACGATCC
CCAGGCGATGGAGTTGGAGTCTGAGGAGTAG

Translation (196 aa):
MPQPYGDAFWENLSQRSSSNWMVEQYIPPILRATDCSRPSLHPLEGLPPPEKLWRRKRKKLHLERMQKGP
GSIPARVRAVTYHLEDLRRRQGIINELKRAQWGSSDATPELPALEEGFELLSTTKYFDVEEERATYPQKE
TYSVTPRDQLLWTPWTPVGQQGTYASGQLSSLTYSTATARKNPVYDPQAMELESEE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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