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Report for CCDS56852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56852.1 Public Mus musculus 12 Gm2042 23 108 98 CCDS HistoryNCBI Gene:100039087Re-query CCDS DB by CCDS ID:56852.1Re-query CCDS DB by GeneID:100039087See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110145.11 ENSMUSP00000105772.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110145.11Link to Ensembl Protein Viewer:ENSMUSP00000105772.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110145Re-query CCDS DB by Protein ID:ENSMUSP00000105772
Original member Current member NCBI NM_001270792.1 NP_001257721.1 Accepted alive Link to Nucleotide Sequence:NM_001270792.1Link to Protein Sequence:NP_001257721.1Re-query CCDS DB by Nucleotide ID:NM_001270792Re-query CCDS DB by Protein ID:NP_001257721Link to BLAST:NP_001257721.1

Chromosomal Locations for CCDS 56852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 87954553 87954582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87957801 87958111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87958625 87959200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87959832 87960405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGTGATCTGTCTCCATTGTCCAGATCAGGATGATTCTTTAGAAGAAGTCACAGAGGAATGCTATTCCC
CACCCACCCTCCAGAACCTGGCAATTCAGAGTCTACTGAGGGATGAGGCCTTGGCCATTTCTGCTCTCAC
GGACCTGCCCCAGAGTCTGTTCCCAGTAATTTTTGAGGAGGCCTTCACTGATGGATATATAGGGATCTTG
AAGGCCATGATACCTGTGTGGCCCTTCCCATACCTTTCTTTAGGAAAGCAGATAAATAATTGCAACCTGG
AGACTTTGAAGGCTATGCTTGAGGGACTAGATATACTGCTTGCACAAAAGGTTCAAACCAGTAGGTGCAA
ACTCAGAGTAATTAATTGGAGAGAAGATGACTTGAAGATATGGGCTGGATCCCATGAAGGTGAAGGCTTA
CCAGATTTCAGGACAGAGAAGCAGCCAATTGAGAACAGTGCTGGCTGTGAGGTGAAGAAAGAATTGAAGG
TGACGACTGAAGTCCTTCGCATGAAGGGCAGACTTGATGAATCTACCACATACTTGTTGCAGTGGGCCCA
GCAGAGAAAAGATTCTATTCATCTATTCTGTAGAAAGCTACTAATTGAAGGCTTAACCAAAGCCTCAGTG
ATAGAAATCTTCAAAACTGTACACGCAGACTGTATACAGGAGCTTATCCTAAGATGTATCTGCATAGAAG
AGTTGGCTTTTCTTAATCCCTACCTGAAACTGATGAAAAGTCTTTTCACACTCACACTAGATCACATCAT
AGGTACCTTCAGTTTGGGTGATTCTGAAAAGCTTGATGAGGAGACAATATTCAGCTTGATTTCTCAACTT
CCCACACTCCACTGTCTCCAGAAACTCTATGTAAATGATGTCCCTTTTATAAAAGGCAACCTGAAAGAAT
ACCTCAGGTGCCTGAAAAAGCCCTTGGAGACACTTTGCATCAGTAACTGTGACCTCTCACAGTCAGACTT
GGATTGCCTGCCCTATTGCCTGAATATTTGTGAACTCAAACATCTGCATATTAGTGATATATATTTATGT
GATTTACTCCTTGAGCCTCTTGGTTTTCTCCTTGAGAGAGTTGGAGATACCCTGAAAACCCTGGAATTGG
ATTCATGTTGTATAGTGGACTTTCAGTTCAGTGCCTTGCTGCCTGCCCTAAGCCAATGTTCTCACCTCAG
AGAGGTCACTTTCTATGATAATGATGTTTCTCTGCCTTTCTTGAAACAACTTCTACACCACACAGCCCTG
CTGAGTCAGCTGATCTATGAGTGTTACCCTGCCCCTATAGAGTGCTATGATGACAGTGGTGTAATACTAA
CACACAGATTAGAAAGTTTTTGTCCTGAGCTTCTGGATATACTGAGAGCCAAAAGACAGCTCCATAGTGT
CTCCTTTCAAACAACCAAATGCTCTAAATGTGGTGGGTGCTACATTTATGATCGGCATACCCAATGTTGC
CGTTTTGTGGAACTACTATAA

Translation (496 aa):
MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGIL
KAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGL
PDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASV
IEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQL
PTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLC
DLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTAL
LSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCC
RFVELL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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