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Report for CCDS56882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56882.1 Public Mus musculus 13 4833439L19Rik 23 108 98 CCDS HistoryNCBI Gene:97820Re-query CCDS DB by CCDS ID:56882.1Re-query CCDS DB by GeneID:97820See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153065.7 ENSMUSP00000119874.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153065.7Link to Ensembl Protein Viewer:ENSMUSP00000119874.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153065Re-query CCDS DB by Protein ID:ENSMUSP00000119874
Original member Current member NCBI NM_001252645.1 NP_001239574.1 Accepted alive Link to Nucleotide Sequence:NM_001252645.1Link to Protein Sequence:NP_001239574.1Re-query CCDS DB by Nucleotide ID:NM_001252645Re-query CCDS DB by Protein ID:NP_001239574Link to BLAST:NP_001239574.1
Original member Current member NCBI NM_001252646.1 NP_001239575.1 Accepted alive Link to Nucleotide Sequence:NM_001252646.1Link to Protein Sequence:NP_001239575.1Re-query CCDS DB by Nucleotide ID:NM_001252646Re-query CCDS DB by Protein ID:NP_001239575Link to BLAST:NP_001239575.1

Chromosomal Locations for CCDS 56882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54552612 54552817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54552898 54553037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54553198 54553304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54556527 54556651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54559198 54559324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54561693 54561842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGTCCCTGCCCATCGGGATGTGCCGTCGGGCATTCAGCTATGATGATGCCCTAGAGGACCCTGCGCCCA
TGACTCCTCCTCCATCGGACATGGGCAGCATCCCCTGGAAGCCAGTGATTCCAGAGCGCAAGTATCAGCA
TCTTGACAAGACAGAGGAGGGCGCGGCCAGTGTCTCTTCCCTTGCTGTGACTCCATCACCAGCCACTGAC
AGTTCAGACAAGGCCCCTGTGGTGAAGGCTAAAGCTACCCATGTCATCATGAGTTCCCTGATCACAAAGC
AGACCCAGGAGAGCATCCAGCGTTTTGAACAACAGGCAGGACTGAGAGATGCTGGCTACACACCCCATAA
GGGCCTTACCACGGAGGAGACCAAGTACCTTCGAGTGGCAGAAGCACTCCATAAACTAAAGCTGCAGAGT
GGAGAGACAGCAAAAGAAGAGAAGCACCCTGCATCAGCCCAGTCCACCCCGAGCAGCACCCCTCACGCGT
CCCCTAAGCAGAAGTCCAGAGGCTGGTTCCCATCTGGCTCCTCCACAGCCTTACCTGCTCCGAATCCTCA
CACCATGGATCCTGGGAGTGGAAATGATAGGAACTCAGCAGACAAATGGAGCCTCTTTGGACCACGACCC
CTGCAGAAATCTGATTCTGGTTTTGCTATTCAGGCTTACAAAGGTGCCCCAAGACCCTCTCCTATGGAGG
TGATGCGTGCCCAGGCCACACGAGTAGGTGAAGATCCAGCAACTTTCAAACCACCAAAGATGGATGTCCC
AATGGTAGAAGGAAAGAAGCAACCACTTCGAACCCATAATCTCAAACCCCGTGACCTGAATGTGCTCACA
CCCACTGGCTTCTAG

Translation (284 aa):
MSLPIGMCRRAFSYDDALEDPAPMTPPPSDMGSIPWKPVIPERKYQHLDKTEEGAASVSSLAVTPSPATD
SSDKAPVVKAKATHVIMSSLITKQTQESIQRFEQQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQS
GETAKEEKHPASAQSTPSSTPHASPKQKSRGWFPSGSSTALPAPNPHTMDPGSGNDRNSADKWSLFGPRP
LQKSDSGFAIQAYKGAPRPSPMEVMRAQATRVGEDPATFKPPKMDVPMVEGKKQPLRTHNLKPRDLNVLT
PTGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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