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Report for CCDS56892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56892.1 Public Mus musculus 13 Zfp729b 23 108 98 CCDS HistoryNCBI Gene:100416706Re-query CCDS DB by CCDS ID:56892.1Re-query CCDS DB by GeneID:100416706See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012873.15 ENSMUSP00000012873.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012873.15Link to Ensembl Protein Viewer:ENSMUSP00000012873.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000012873Re-query CCDS DB by Protein ID:ENSMUSP00000012873
Original member NCBI NM_001163246.2 NP_001156718.1 Updated not alive Link to Nucleotide Sequence:NM_001163246.2Link to Protein Sequence:NP_001156718.1Re-query CCDS DB by Nucleotide ID:NM_001163246Re-query CCDS DB by Protein ID:NP_001156718
Current member NCBI NM_001163246.3 NP_001156718.1 Accepted alive Link to Nucleotide Sequence:NM_001163246.3Link to Protein Sequence:NP_001156718.1Re-query CCDS DB by Nucleotide ID:NM_001163246Re-query CCDS DB by Protein ID:NP_001156718Link to BLAST:NP_001156718.1

Chromosomal Locations for CCDS 56892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 67591007 67593915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67595216 67595311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67596649 67596775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 67609573 67609578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3138 nt):
ATGGAGGAAATGCTGTCATTCAAGGATGTGGCCATTGATTTCTCTGCAGAGGAGAGGGAATGCCTTGATC
CTGCTCAGTGGAAACTGTACAGGAATGTGATGTTGGAGAATTATGACAATCTTGTGTTCCTGGGTCTTAC
TTCGTCTAAGCCATATCTGGTCACATGTCTGGAGCAAATACAAGAGCCTTCAGATGTGAAAAGAGGAGCA
GCTACCTCTATGCTCCCAGAATGCAGAGAATATGGAAAAGTTTTTGAGTGGTCCAAAGTGTTTCAAAATC
ACCAGATAATTGACTTAGAAGTGAAGCCCTACAGGAGTGAAGAACGTGCCAAGTCCTTCCATATTCCATC
ATTAAGTTCTGAAGAGAGCACAATTCATGCAGGAGAAAAACCTTACAAATGTGAAGTTTGTGGCAAGGCC
TTCTGCATTCCATTATTACTTTCTAAACACAAGATAATTCATAAAGGAGAGAATCTCTACAAGTGTGAAG
TGTGTGGCAAGGCCTTCCAACATCCATCAAGACTTTCCAGACATAAGAAGATTCATTCAGAAGAGAAACC
ATACAAGTGTGAAGTATGTGGAAAAGCCTTCCACTTTCCATCATTACTTTTGGTACACAAGAGAGTTCAT
ACAGGAGAAAAACCATACAAGTGTGAAGTATGTGGCAAGGCCTTTCATTATCCATCAATACTCTCTAAAC
ACAAGCGAATTCATACAGGAGAGAAACCATACAAGTGTGAAGAATGTGGCAAGGCCTTCCACATTTCATC
ATTTCTTTCTAAACACAAAATAATTCATAGAGGAGAAAAACCCTACAAGTGTGAGGTATGTGGCAAGGCC
TTCCATTATCCATCAAGACTTTCCAACCATAAGAAAATCCATTCAGTAGAGAAACCATACAAGTGTGAAA
TATGTGGGAAGGCCTTCCGCATTTTATCACTCCTTTCTAAGCACAAGATAATTCATACAGAAGAGAATCC
TTACAAGTGTGAAGTATGTGGCAAGGCTTTCGATTATCCCTCAAGACTTTCTACCCATGCAAAAATGCAT
ACAGGAGAGAAACCATACAAGTGTGAAGTATGTGAAAAGGCTTTCCGTTCTCTGTCATCACTTTCTAAAC
ACAGGAGAATTCATATGGGAGATAATTATTATAACAGTGAATTATGTAGCAATGCCTTCGTTTATCCTTC
AAGACTTTCTAAACATAAGAAAATTTGTAGAGGAGAGAAGCCCTACAAATGTGAAGTATGTGGCAAGGCC
TTCCATGTTTCATCACTGCTTTCTAAACACAGGACAATTCATACAGGAGAAAAACTCTATAAGTGTGAAG
TATGTGGGAAGGCCTTCTATTATCCATCAAGACTTTCCACGCATAAGAGAATTCATACAGGAGAAAAGCC
ATACAAGTGTGAAGTATGTGGAAAGGCGTTCTGTTTTCCACCATCACTATCTAAACACAAGAGAATTCAC
ACAGGAGAGAAACCATACAAGTGTAAAGAATGTGGGAAGGCCTTCCGATTTCCATCATCACTATCTGCAC
ACAAGAAAATTCATACGGGAGAAAAACCCTACAAGTGTGAAGTTTGTGGCAAGGCCTTCCATTATCCATC
ATTACTTTCTAAACACAAGATAATTCATACAGGAGAAAAACCCTATAAGTGTGACATATGTGACCAGGCA
TTTCATGTTCCATCAAAACTTTCTCATCACAAGATAATTCATACAGGAGAAAAACCCTACAAGTGTGAAG
TATGTGGCAAGGCCTTCCATTATTCATCACTACTTTCTAAACACAAGATTATTCATACAGGAAAAAAACC
CTACAAGTGTGAAGTGTGTGACAAGGCCTTCCATTATCCATCAAGACTTTTTAGCCATACAAAAATGCAT
ACTGGAGAGAAACCATACAAGTGTGAAGTGTGTGGAAAGGCCTTCTGTTCTCCATCATCACTTTCTAAAC
ACAAGAGAATTCATAAAGTTGAAAAAGCCTACAGTTGTGAGATTTGTGGAAAAACCTTCTGCATTCCATT
ATTACTTTCTAAACACAAGATAATTCATACAGGTGAGAATCACTATAACAGTGAGGTATGTAGCAAGTTC
TTTGTTTATCCTTCAAGACTTCCTAAACATAAGAAAATTTATAAAAGAGAGAAACCATACAATTGTGATG
TATGTGGGAAGGCCTTCGATTATCCATCAAGACTTTCTAAACATAAGAAAATTCATACAAGAGAGAAACC
GTACAAGTGTGATGTATGTGGAAAGGCCTTCCACATTGCATCATTACTATTAGTACACAAGGGAATTCAT
ACTGGAGAAAAACCCTACAAGTGTGAAGATTGTGGGAAGGCTTTCTATTATCCATCATTTCTTTCTAAAC
ACAAGAGAATTCATACAGGAGAAAAACCGTACCAGTGTGAAGTGTGTGGCAAGGCCTTCCATGTTTCATC
ATCACTATCTAAACACAGGATAATTCATACAGGAGAGAGACCATACAAGTGTGAAGTGTGTGGGAAGGCC
TTCCGCTTTTCATCATCACTATCTAAACACAAGAGAATTCATACAGGAAAGAAACCCTACAAGTGTGAAG
AATGTGGCAAGGCCTTCCATTTTCCATCATTGCTTTCTAAACACAAGATAAGTCATACTAGAGAAAAATT
CTACAATTGTGACTTATGTAGCAAGACCTTCCATTATCCATCATTACTTTCTAAACACAAGATGATTCAT
ATGGAAGGAAAACCCCACAAGTGTGATGTATGTGGTAAGGCCTTCCATTATCCTTCAAAACTTTCCAATC
ATAAGAAAATTCACACAGGAGAGAAACCCTACAAGTGTGAAGTATGTGGAAATGTCTTCCGTTTTCCATC
GTCACTTTCTGAACACAAGAAAACTCATACTGGAGAGAATCCATACAAGTGTGAAGTATGTGGCAAGGCC
TTCTGTTCTGCATCATTACTTTCTAAACACAAGATAATTCATATAGGAAAGAAGCCCTACAAATGTGAAG
TGTGTGGCAAGGCCTTCCATTATCCGTCACGACTTTCCAAGCATAAGGCAATTCATGGTGCTGGAGAGAT
GTCTAGAGTTGAGGGCACTGGATGCCCTTCCAGAGGTCCTGAGTTTAATTCCCAGTAA

Translation (1045 aa):
MEEMLSFKDVAIDFSAEERECLDPAQWKLYRNVMLENYDNLVFLGLTSSKPYLVTCLEQIQEPSDVKRGA
ATSMLPECREYGKVFEWSKVFQNHQIIDLEVKPYRSEERAKSFHIPSLSSEESTIHAGEKPYKCEVCGKA
FCIPLLLSKHKIIHKGENLYKCEVCGKAFQHPSRLSRHKKIHSEEKPYKCEVCGKAFHFPSLLLVHKRVH
TGEKPYKCEVCGKAFHYPSILSKHKRIHTGEKPYKCEECGKAFHISSFLSKHKIIHRGEKPYKCEVCGKA
FHYPSRLSNHKKIHSVEKPYKCEICGKAFRILSLLSKHKIIHTEENPYKCEVCGKAFDYPSRLSTHAKMH
TGEKPYKCEVCEKAFRSLSSLSKHRRIHMGDNYYNSELCSNAFVYPSRLSKHKKICRGEKPYKCEVCGKA
FHVSSLLSKHRTIHTGEKLYKCEVCGKAFYYPSRLSTHKRIHTGEKPYKCEVCGKAFCFPPSLSKHKRIH
TGEKPYKCKECGKAFRFPSSLSAHKKIHTGEKPYKCEVCGKAFHYPSLLSKHKIIHTGEKPYKCDICDQA
FHVPSKLSHHKIIHTGEKPYKCEVCGKAFHYSSLLSKHKIIHTGKKPYKCEVCDKAFHYPSRLFSHTKMH
TGEKPYKCEVCGKAFCSPSSLSKHKRIHKVEKAYSCEICGKTFCIPLLLSKHKIIHTGENHYNSEVCSKF
FVYPSRLPKHKKIYKREKPYNCDVCGKAFDYPSRLSKHKKIHTREKPYKCDVCGKAFHIASLLLVHKGIH
TGEKPYKCEDCGKAFYYPSFLSKHKRIHTGEKPYQCEVCGKAFHVSSSLSKHRIIHTGERPYKCEVCGKA
FRFSSSLSKHKRIHTGKKPYKCEECGKAFHFPSLLSKHKISHTREKFYNCDLCSKTFHYPSLLSKHKMIH
MEGKPHKCDVCGKAFHYPSKLSNHKKIHTGEKPYKCEVCGNVFRFPSSLSEHKKTHTGENPYKCEVCGKA
FCSASLLSKHKIIHIGKKPYKCEVCGKAFHYPSRLSKHKAIHGAGEMSRVEGTGCPSRGPEFNSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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