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Report for CCDS56963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56963.1 Public Mus musculus 14 Fam124a 23 108 98 CCDS HistoryNCBI Gene:629059Re-query CCDS DB by CCDS ID:56963.1Re-query CCDS DB by GeneID:629059See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039064.7 ENSMUSP00000047681.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039064.7Link to Ensembl Protein Viewer:ENSMUSP00000047681.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039064Re-query CCDS DB by Protein ID:ENSMUSP00000047681
Original member Current member NCBI NM_001243857.1 NP_001230786.1 Accepted alive Link to Nucleotide Sequence:NM_001243857.1Link to Protein Sequence:NP_001230786.1Re-query CCDS DB by Nucleotide ID:NM_001243857Re-query CCDS DB by Protein ID:NP_001230786Link to BLAST:NP_001230786.1

Chromosomal Locations for CCDS 56963.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 62555853 62555914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 62564488 62564519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 62587153 62587886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 62605873 62606655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGAACCCGAAGGCGGGCGGTGAGGAAGAGGACTGCGTGGACTCTGGCGCCGAGACCGGAGGGTCCGACT
ACAGCCACCTGTCCTCCACCAGCAGTGAGCTTTCTGTGGAGGAGGCACAGGACCCTTTCCTGGTGAGCAT
CCACATCATCGCAGACCCAGGGGAGTCACAGCCACTGCAGGAGGCCATCGACAAGGTTTTGGCGTGGGTT
CACCCTGATCTCCCACTGTTCCGAGTGTCTGAGAGGCGCACAACCAGGCGAAGGCGGAAGTCTCCCAAGG
GTGCACAGCCGGCGCTGGCGGTGGTGCTGTTCCTACAGGAGGAGTACGGAGAGGAGCAGATCCTACAGGT
ACACAGGGTGCTGCAGCAGCCGCCCTGGCGTCACCACCACACAGAGCGAGTGCATGGCCGCTTCATACCC
TACCTGCCTTGCAGTCAGGACTTCTTCACTCTGGCTCCCGGGACCCCACTGTGGGCAATCAGGCCGGTGC
ACTACGGCAAGGAAATCGTGCGCTTCACCATCTACTGTCGCCATAACAGCTACACTGACAGCCTCCGCTT
CTATGAGCTGATCTTGCGCCGGAGCCCCAGCCAGCGGAAAGCAGACTTCTGCATCTTCCCCATTTTCTCC
AATCTGGATGTGGACATCCAGTTCTCCCTGAAAAGACTACCCTGCGACCAGAAGCCAGTGCCCACCGACT
CCTCCGTGCTGGAGTTCCGAGTGAAGGACATCGGGCAACTGGTACCGCTCCTTCCCAACCCCTGCAGCCC
CATCAGCGAGGGGCGCTGGCAGACTGAGGACCACGATGGCAACAAGATCCTTCTGCAGGCACAGAGGACA
CACAAAAAGGCCCCCAAGTACAGCAGAGCACATCACTCCTCTGAGAAGAAACCACATTCTGCTCCTCCTG
CAGCGGTCGACACACCAAACACAGGACAGGGCAGCAGCCAGACAGCCCTACATGACAGCCCATCCAACCA
GATAGCCCGGCTCCCTGGGGACAAGCAGGAGTATAACACACAGTCGAGCACCTCCAGCCCTGCCTGGTCT
TTCCCGAGAAGCAAGTCTTTGTTTTGTTTGCCCAGTGGAGGCCCTTCCCCAACTGAACCACAGCCACTAC
CGACCAATTCCCAGAGACACAGTGCATCGGAGTGGAAGCCTAGCCGCCTCATGTCCATTGATGACTTAGA
AGGGGCCCAAGAGACAGATGTGGACACAGGCCTGCGGCTGTCCTCCTCAGACCTGTCTGTGGTCTCTGCA
TATTCTGCACCCAGTAGGTTTTACAACACAATAGAGGCACCCCTCTCCTCTGAGAGATGCAGTAGCCACT
GGCCAGCACACAAGAGTCCCAAGAAAGGACCTATGCCCGCTGCCAGTGAGGTAAGCCCAGACACTGCCTG
TGTTTCCCACCCTCTCTTCACCAAAGGGTCCCCCAGGCCTGCAGAGACAACTACTCCTGCTCTCTCAGCT
TCTGATGCCTCCTTGCTCACAGAGTCATCCACACACACCCCATGTCATGACCCCAAAGCCACACAGGGTG
TCCAAGGCATGCTATTGCCTCCAACAACAGTTGGTCCTGAGACTGATGACATGGAGGAGTTCTACATCTG
A

Translation (536 aa):
MNPKAGGEEEDCVDSGAETGGSDYSHLSSTSSELSVEEAQDPFLVSIHIIADPGESQPLQEAIDKVLAWV
HPDLPLFRVSERRTTRRRRKSPKGAQPALAVVLFLQEEYGEEQILQVHRVLQQPPWRHHHTERVHGRFIP
YLPCSQDFFTLAPGTPLWAIRPVHYGKEIVRFTIYCRHNSYTDSLRFYELILRRSPSQRKADFCIFPIFS
NLDVDIQFSLKRLPCDQKPVPTDSSVLEFRVKDIGQLVPLLPNPCSPISEGRWQTEDHDGNKILLQAQRT
HKKAPKYSRAHHSSEKKPHSAPPAAVDTPNTGQGSSQTALHDSPSNQIARLPGDKQEYNTQSSTSSPAWS
FPRSKSLFCLPSGGPSPTEPQPLPTNSQRHSASEWKPSRLMSIDDLEGAQETDVDTGLRLSSSDLSVVSA
YSAPSRFYNTIEAPLSSERCSSHWPAHKSPKKGPMPAASEVSPDTACVSHPLFTKGSPRPAETTTPALSA
SDASLLTESSTHTPCHDPKATQGVQGMLLPPTTVGPETDDMEEFYI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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