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Report for CCDS56989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56989.1 Public Mus musculus 15 Apol8 23 108 98 CCDS HistoryNCBI Gene:239552Re-query CCDS DB by CCDS ID:56989.1Re-query CCDS DB by GeneID:239552See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070911.3 ENSMUSP00000064237.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070911.3Link to Ensembl Protein Viewer:ENSMUSP00000064237.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000070911Re-query CCDS DB by Protein ID:ENSMUSP00000064237
Original member Current member EBI ENSMUST00000089450.4 ENSMUSP00000086873.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089450.4Link to Ensembl Protein Viewer:ENSMUSP00000086873.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089450Re-query CCDS DB by Protein ID:ENSMUSP00000086873
Original member Current member NCBI NM_001081970.2 NP_001075439.1 Accepted alive Link to Nucleotide Sequence:NM_001081970.2Link to Protein Sequence:NP_001075439.1Re-query CCDS DB by Nucleotide ID:NM_001081970Re-query CCDS DB by Protein ID:NP_001075439Link to BLAST:NP_001075439.1
Original member Current member NCBI NM_001357895.1 NP_001344824.1 Accepted alive Link to Nucleotide Sequence:NM_001357895.1Link to Protein Sequence:NP_001344824.1Re-query CCDS DB by Nucleotide ID:NM_001357895Re-query CCDS DB by Protein ID:NP_001344824Link to BLAST:NP_001344824.1
Original member Current member NCBI NM_001357896.1 NP_001344825.1 Accepted alive Link to Nucleotide Sequence:NM_001357896.1Link to Protein Sequence:NP_001344825.1Re-query CCDS DB by Nucleotide ID:NM_001357896Re-query CCDS DB by Protein ID:NP_001344825Link to BLAST:NP_001344825.1

Chromosomal Locations for CCDS 56989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 77749355 77750216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77752799 77752925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 77753244 77753274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGGACCCTTCAGACTGCGAGGATGCCCCAGGAGACAGAACCTTCATTGAGGAAGCCGCTGAGTACCTGC
AGCACACATCGGGCAGGGAAGACCTGAGGCTGCTGCTGACCGAAGATGGAGCCTGGGAGGCCTTTGTGGC
GGAAGCTGAGTTGTCCAGAGCTGATGCAGACACTTTACGCGACGCCCTCCATGCACTCACAGCAAACCTG
GCTGTGGAAGACCAGGAAAGGCTCCAACGTGACCTGCAGGACATGGAGAGGTTTATGGATGCGTTTCCCC
AGGTGAAACTGGAGCTGGAGGGACACATCGGGAAGCTCCGCACCCTGGCAGACAAGGTTGACAAGGTGCA
CAGGGACTGTACCATCTCCAAGCTTGTGGCCGGCTCCACCAGCACTGTGTCTGGCATCCTGACCCTCCTT
GGCCTCACTCTGGTACCCGTGACAGCTGGGATCAGTCTGGTACTCTTGGCAACAGGGATGGGCCTGGGAG
CAGCAGCGGCTGTGACTAGTGTCTCCTCTGGGATCGTGGACTACACAAGTAGGTCATTAGCCAAAACGGA
AGCCAGCCACCTGGTGTCAACCGGCATGGCCAAAGTGAAGATGGTTGCAGACGCTGTGGTTCATTCAGGA
CCCCAGGTCTTGTCCTTATCTGAGAATTGCTGCCGTGTCCTACGGTGCATTGAGCAGAGCATCTATGCCA
TCAAGCTCACCAAAGCCAACCCTGCCTTAGCAGCTAGTGCCATGGGGAGCACCTCTGCCCAAAGTGGTAA
GCACGTGAAGAAGGCCTTTAAAGGCACTGCCCTGGCAATAAGCAGAAGAGCCCGGATCATGGGTATAGCC
ACCGCAGGTGTGTCCCTCGTTGGGGATGTGATCAGCCTTGTGAAACAGTCCAAGAATTTGCACAAGGGCA
CAAAAGCAAAGTCTGCCGAGGAGTTGAGGCAGCAGGCTCGGGAGCTGGAGGAGAAACTGGAGGCGCTCAT
CCAGATGTATGAAGGTTTGCAGGCAGGCTCAAGGCGGTAA

Translation (339 aa):
MDPSDCEDAPGDRTFIEEAAEYLQHTSGREDLRLLLTEDGAWEAFVAEAELSRADADTLRDALHALTANL
AVEDQERLQRDLQDMERFMDAFPQVKLELEGHIGKLRTLADKVDKVHRDCTISKLVAGSTSTVSGILTLL
GLTLVPVTAGISLVLLATGMGLGAAAAVTSVSSGIVDYTSRSLAKTEASHLVSTGMAKVKMVADAVVHSG
PQVLSLSENCCRVLRCIEQSIYAIKLTKANPALAASAMGSTSAQSGKHVKKAFKGTALAISRRARIMGIA
TAGVSLVGDVISLVKQSKNLHKGTKAKSAEELRQQARELEEKLEALIQMYEGLQAGSRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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