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Report for CCDS57056.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57056.1 Public Mus musculus 17 Sbp 23 108 98 CCDS HistoryNCBI Gene:20234Re-query CCDS DB by CCDS ID:57056.1Re-query CCDS DB by GeneID:20234See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57056.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024940.10 ENSMUSP00000024940.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024940.10Link to Ensembl Protein Viewer:ENSMUSP00000024940.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024940Re-query CCDS DB by Protein ID:ENSMUSP00000024940
Original member Current member EBI ENSMUST00000183252.7 ENSMUSP00000138219.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183252.7Link to Ensembl Protein Viewer:ENSMUSP00000138219.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183252Re-query CCDS DB by Protein ID:ENSMUSP00000138219
Original member Current member EBI ENSMUST00000183155.7 ENSMUSP00000138341.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183155.7Link to Ensembl Protein Viewer:ENSMUSP00000138341.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183155Re-query CCDS DB by Protein ID:ENSMUSP00000138341
Original member Current member EBI ENSMUST00000181985.7 ENSMUSP00000138422.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000181985.7Link to Ensembl Protein Viewer:ENSMUSP00000138422.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000181985Re-query CCDS DB by Protein ID:ENSMUSP00000138422
Original member NCBI NM_011321.3 NP_035451.1 Updated not alive Link to Nucleotide Sequence:NM_011321.3Link to Protein Sequence:NP_035451.1Re-query CCDS DB by Nucleotide ID:NM_011321Re-query CCDS DB by Protein ID:NP_035451
Current member NCBI NM_011321.4 NP_035451.1 Accepted alive Link to Nucleotide Sequence:NM_011321.4Link to Protein Sequence:NP_035451.1Re-query CCDS DB by Nucleotide ID:NM_011321Re-query CCDS DB by Protein ID:NP_035451Link to BLAST:NP_035451.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035451.1 199 P15501 199 100% 0 0

Chromosomal Locations for CCDS 57056.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23942446 23942500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23942612 23942717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23945007 23945445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGCTGCTGTTGCTGACTTTGGCTTTCCTGGCCAGTCCCACATGCAGAGCCCAGAATGTCCTGGGGAATG
CTGCTGGCAAGTATTTCTACGTTCAAGGTGAAGATCAGGGGCAACTCAAGGGCATGCGGATCTTCTTAAG
TGTTTTCAAGTTCATCAAGGGCTTCCAGCTGCAGTTTGGCAGTAACTGGACTGATGTCTATGGAACCCGG
TCAGATAACTTTATAGACTTCCTTCTGGAGGACGGAGAGCACGTGATAAAGGTAGAGGGCAGTGCAGTGA
TCTGCCTGACTTCCCTGACCTTCACTACAAACAAGGGGCGTGTGGCCACCTTTGGTGTTAGAAGGGGTCG
ATACTTCAGTGACACTGGAGGTTCAGACAAGCATCTAGTGACTGTCAATGGAATGCATGCACCGGGCCTC
TGCGTCAGAGGGATTGGCTTCAAATGGGGAAATATCAATGCTAATGGCAATGACCATTATAATAACAAGG
AAGATAAGGCTGACAACAAAGATGCTGACAACAAAGATGCTGACAACAAAGATGATGGAGATGAGGATGA
TGATGGAAACGATGATGATGACCAGAAAGATGAAAGCTGA

Translation (199 aa):
MLLLLTLAFLASPTCRAQNVLGNAAGKYFYVQGEDQGQLKGMRIFLSVFKFIKGFQLQFGSNWTDVYGTR
SDNFIDFLLEDGEHVIKVEGSAVICLTSLTFTTNKGRVATFGVRRGRYFSDTGGSDKHLVTVNGMHAPGL
CVRGIGFKWGNINANGNDHYNNKEDKADNKDADNKDADNKDDGDEDDDGNDDDDQKDES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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