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Report for CCDS57187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57187.1 Public Mus musculus 2 Commd7 23 108 98 CCDS HistoryNCBI Gene:99311Re-query CCDS DB by CCDS ID:57187.1Re-query CCDS DB by GeneID:99311See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109782.1 ENSMUSP00000105404.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109782.1Link to Ensembl Protein Viewer:ENSMUSP00000105404.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109782Re-query CCDS DB by Protein ID:ENSMUSP00000105404
Original member Current member NCBI NM_001195390.1 NP_001182319.1 Accepted alive Link to Nucleotide Sequence:NM_001195390.1Link to Protein Sequence:NP_001182319.1Re-query CCDS DB by Nucleotide ID:NM_001195390Re-query CCDS DB by Protein ID:NP_001182319Link to BLAST:NP_001182319.1

Chromosomal Locations for CCDS 57187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153619436 153619512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153620446 153620494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153621770 153621819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153622044 153622134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153622651 153622688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153622772 153622828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153628465 153628492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (390 nt):
ATGAAAAGCCTCCTACTGGTTCCAAATGGTGCACTGAAGAAAGGCCTCACTGCCGAGCAGGTGCGGACTG
ATCTCCAGACGCTAGGTCTTAGCGAGGAGAAAGCCACTTACTTTTCTGAAAAGTGGAAGCAGAACGCCTC
GACCCTTGCACAGTGGGCCATGGGTCAGACCCTGATGGTTAACCAGCTGATTGATATGGAGTGGAGGTTT
GGAGTGACGTCTGGGAGCAGTGAATTAGAGAAAGTGGGAAGCATATTTTTACAGTTAAAGTTGGTGGTTA
AGAAAGGAAAACAAACTGAAAATTTGTATATGGAACTAACCTTGCCCCAGTTCTACAGCTTCCTGCACGA
GATGGAGAGAGTCCGAGCGAGCATGGAGTGCCTCAGCTGA

Translation (129 aa):
MKSLLLVPNGALKKGLTAEQVRTDLQTLGLSEEKATYFSEKWKQNASTLAQWAMGQTLMVNQLIDMEWRF
GVTSGSSELEKVGSIFLQLKLVVKKGKQTENLYMELTLPQFYSFLHEMERVRASMECLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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