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Report for CCDS57209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57209.1 Public Mus musculus 3 Bbs12 23 108 98 CCDS HistoryNCBI Gene:241950Re-query CCDS DB by CCDS ID:57209.1Re-query CCDS DB by GeneID:241950See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108121.3 ENSMUSP00000103756.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108121.3Link to Ensembl Protein Viewer:ENSMUSP00000103756.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108121Re-query CCDS DB by Protein ID:ENSMUSP00000103756
Original member Current member NCBI NM_001255992.1 NP_001242921.1 Accepted alive Link to Nucleotide Sequence:NM_001255992.1Link to Protein Sequence:NP_001242921.1Re-query CCDS DB by Nucleotide ID:NM_001255992Re-query CCDS DB by Protein ID:NP_001242921Link to BLAST:NP_001242921.1

Chromosomal Locations for CCDS 57209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 37319405 37321186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGTCAGAAGGCTTGAACTCTTGCATTGAAGCAGTAGTTTCTCTTCAAGTACCCATACACAATGTATTTG
ACCACATGGACAACACAAGTACAGTTTACAAACTTGAAACAGTTAATGCCACTTTGTGTCCTTTTCTACA
AGACCCTTCAGGTTCTGGGTTGTTACAGGAAAAGCGTGATTTCAAAGATGCTACATCTCCGTTATTGTCC
ACTTACAGTCTTTCTGGGAGACATGCTGAGTCACCCAAATTCTTCAAACCTCAGAATAATCTTGAAACAG
AAAAAAACACATTGCAAGTTTTGAAAAACAATCTATATACAGATTCCTTCTGCAAAAAGTCAGCACTAGC
TCACAGTAGGCATTTTAATAGGACAGATAATAGCCACTGGATAAGCCGACATGATGGATTTCTAGAACAA
CTTGAATCAACTCCGAAAGTACTTAGATGTAATGATTTTGGGGAGTTAGCAGTTGGCTTGAGCCATGGAG
ATCACAGCAGCATGGCATTGGCCAAAGCAGCAGTGAGGTTGCAGTGGCAGAGTCTGTGTCTGCAGCAAGC
CAACTGGATGGCACCCTTTATGTTTGATATTTCAAGACTTCTCACTTGCTGTATTCCAGGTCTACCTGAA
ACTTTTTCCCGTGTTGGTCTAGGATATGTCACTTTTGTTACCATGTCTAGTATTACTCTTATCAAGGAAT
TGCAGGATCAGCCTTTCCGAGTGATTCTCATTGAGGGTGACCTCACAGAGAGTTACCGACACCTGGGATT
TAATAAGTCTGTAAATATTAAGACTAAGTTAGATAGTGGGGAGCTTTCAGAAGATAGTGCAGAAGAACTG
TGGACAAATCATGTGTTACAGGTGTTAATCCAGTTCAATGTGACCCTCATCTTGGTACAAGGAAGTGTAT
CAGAACACTTGACTGAAAAATGCATGCACAGTAAGCGGCTGGTAATTGGGGCAGTGAATGGCAGTGTGTT
GCAGGCATTTGCAGAGGCCACAAGAGCAGTGCCAGTAGCCTATGTTACACAAGTGAATGAAGACTGTGTA
GGCAGCGGGGTCTCTGTGACCTTCTGGATGAGTCCTCATGATATAAACAGGAGCAACAGAATAGCAATCT
TGTTAACAGCAGAAGGAATTAATTTGATTACAGCAGTACTTACTAGTCCAGCAAGTGCTCAGATGGAAAC
CAAGGAAGACAGGTTCTGGTCTTGTGTGTATCGTTTATATCATGCCCTAAAAGAAGAGAAGGTCTTCCTT
GGCGGTGGTGCTGTTGAATTTTTATGTCTTAGCCATCTTCAAATTCTTGCTGAGCAATCTTTAAATAGAG
GAAACCATGCTTGTTTAGGATGGCTTCCTGATTCTTCCTCTTGGATGGCCTCATCTCTGTCCGTCTACAG
ACCTACTGTGCTGAAGTCCCTGGCAGGTGGGTGGCATGAATTCCTGTCAGCTATCATGTGTAACACTGCC
ACTCACCCATCAGCAGTGGAAGCTAGGACATTCATTCAACAACATGTACAAAATGCCATTGACTCTGGCT
CCCCTTCATCTTACATCTTGAGTGAATATAGTAAACTAAGTAGTGGAGTTTTTCATTCAGGTATTTCAGA
TAACCTGGAGCTGGTTCCAAGAGTTTATGATACTGTTACACCAAAGATTGAAGCATGGCGCCGAGCATTG
GATGTAGTGCTCTTAGTGCTTCAGACAGACAGTGAAATAATTACTGGACTTGTACACACAGAGATGAATT
CACAGGAATTAGATGGAGTTTTATTTTTGTAG

Translation (593 aa):
MSEGLNSCIEAVVSLQVPIHNVFDHMDNTSTVYKLETVNATLCPFLQDPSGSGLLQEKRDFKDATSPLLS
TYSLSGRHAESPKFFKPQNNLETEKNTLQVLKNNLYTDSFCKKSALAHSRHFNRTDNSHWISRHDGFLEQ
LESTPKVLRCNDFGELAVGLSHGDHSSMALAKAAVRLQWQSLCLQQANWMAPFMFDISRLLTCCIPGLPE
TFSRVGLGYVTFVTMSSITLIKELQDQPFRVILIEGDLTESYRHLGFNKSVNIKTKLDSGELSEDSAEEL
WTNHVLQVLIQFNVTLILVQGSVSEHLTEKCMHSKRLVIGAVNGSVLQAFAEATRAVPVAYVTQVNEDCV
GSGVSVTFWMSPHDINRSNRIAILLTAEGINLITAVLTSPASAQMETKEDRFWSCVYRLYHALKEEKVFL
GGGAVEFLCLSHLQILAEQSLNRGNHACLGWLPDSSSWMASSLSVYRPTVLKSLAGGWHEFLSAIMCNTA
THPSAVEARTFIQQHVQNAIDSGSPSSYILSEYSKLSSGVFHSGISDNLELVPRVYDTVTPKIEAWRRAL
DVVLLVLQTDSEIITGLVHTEMNSQELDGVLFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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