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Report for CCDS57221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57221.1 Public Mus musculus 3 Arhgef2 23 108 98 CCDS HistoryNCBI Gene:16800Re-query CCDS DB by CCDS ID:57221.1Re-query CCDS DB by GeneID:16800See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170653.8 ENSMUSP00000127843.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170653.8Link to Ensembl Protein Viewer:ENSMUSP00000127843.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170653Re-query CCDS DB by Protein ID:ENSMUSP00000127843
Original member NCBI NM_001198913.1 NP_001185842.1 Updated not alive Link to Nucleotide Sequence:NM_001198913.1Link to Protein Sequence:NP_001185842.1Re-query CCDS DB by Nucleotide ID:NM_001198913Re-query CCDS DB by Protein ID:NP_001185842
Current member NCBI NM_001198913.2 NP_001185842.1 Accepted alive Link to Nucleotide Sequence:NM_001198913.2Link to Protein Sequence:NP_001185842.1Re-query CCDS DB by Nucleotide ID:NM_001198913Re-query CCDS DB by Protein ID:NP_001185842Link to BLAST:NP_001185842.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185842.1 956 Q60875-5 956 100% 0 0

Chromosomal Locations for CCDS 57221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88629805 88629931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88631911 88631978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88632276 88632333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88632913 88633042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88633258 88633367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88633500 88633646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88634410 88634660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88634983 88635108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88635601 88635718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88635855 88636103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88638271 88638347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88639323 88639492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88640283 88640350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88642426 88642626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88642926 88643039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643149 88643216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643345 88643380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643562 88643612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643790 88644233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88646177 88646360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88646790 88646863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2871 nt):
ATGAAGGAAGCTAAAGATGCCCGCTATACCAACGGCCACCTCTTCACCACCATCTCCGTCTCCGGCATGA
CCATGTGCTATGCCTGTAACAAGAGCATCACAGCCAAGGAAGCCCTCATTTGTCCTACATGTAACGTGAC
CATCCACAACCGCTGTAAAGACACCCTGGCCAACTGTACCAAGGTCAAGCAGAAGCAACAGAAAGCTGCA
CTGCTGAGGAACAACACTGCTTTGCAGTCTGTCTCCCTTCGAACGACCACCAGAGAGCGGCCAACGTCTG
CCATTTACCCTTCCGACAGCTTCCGGCAGTCCCTCCTGGGTTCTCGGCGGGGCCTCTCCTCCTTATCTTT
GGCCAAAAGTGTTTCCACTACCAACATTGCTGGACATTTCAATGATGAGTCTCCTCTGGGGCTGCGTCAG
ATCCTCTCCCAGTCCACAGACTCCCTCAACATGCGGAACCGAACCCTGTCCGTGGAATCCCTTATTGATG
AAGGTGTAGAAGTGTTCTACAATGAGCTGATGAGCGACTTTGAGATGGATGAGAAGGACTTTGAGGCGGA
TTCTTGGAGCCTTGCCGTGGACAGCAGCTTCCTGCAGCAGCACAAAAAGGAAGTGATGAAGAAGCAAGAT
GTCATCTATGAGCTGATCCAGACAGAGCTGCACCACGTGAGAACCTTGAAGATTATGACCCGCCTCTTTC
GCACTGGGATGCTGGAAGAGTTGCAGATGGAGCCAGAAGTGGTCCAGGGCCTGTTCCCCTGCGTGGATGA
ACTCAGTGACATTCACACACGTTTCCTTAATCAGCTTCTGGAACGGCGGCGCCAGGCTCTATGTCCAGGC
AGCACCCGGAACTTTGTCATCCATCGTTTGGGTGACTTGCTCATCAGTCAGTTCTCAGGTTCCAATGCTG
AGCAGATGCGCAAGACCTACTCAGAGTTCTGCAGCCGCCACACCAAGGCCTTAAAGCTCTATAAGGAGCT
GTATGCTCGAGACAAACGCTTCCAACAGTTCATCCGGAAAATGACCCGCTCAGCTGTGTTGAAGCGGCAT
GGAGTTCAGGAATGCATTCTCCTGGTGACTCAGCGGATCACCAAATACCCTGTGCTCATCAACAGAATCC
TGCAGAATTCCCACGGGGTTGAAGAAGAGTACCAAGACTTGGCGTCAGCCCTAGGACTAGTGAAGGAGTT
GTTGTCCAATGTGGACCAGGATGTGCACGAGCTGGAGAAAGAGGCCCGCCTGCAGGAGATTTACAACCGA
ATGGATCCCCGGGCTCAGACCCCCGTACCTGGCAAGGGCCCCTTCGGCCGAGATGAACTTTTACGGAGAA
AACTTATCCATGAAGGCTGCCTGCTCTGGAAGACAGCCACAGGCCGCTTCAAAGATGTCCTGTTGCTGCT
GATGACAGATGTGCTCGTGTTTCTCCAGGAAAAGGACCAGAAATACATTTTCACGTCTCTGGACAAGCCC
TCAGTGGTGTCCTTGCAGAACCTCATCGTAAGAGACATAGCCAACCAGGCGAAAGGGATGTTTCTGATTA
GTTCTGGACCGCCTGAGATGTATGAGGTGCATGCAGCGTCCCGAGACGACCGGACTACCTGGATCCGTGT
CATCCAGCAGAGTGTGCGCCTGTGCCCGTCCAGGGAGGACTTTCCTCTGATCGAGACAGAGGATAAGGCG
TATCTCCGGAGGATCAAGACGAAACTGCAGCAGAAAAACCAGGCGCTAGTGGAGCTGCTACAGAAGAATG
TTGAGCTGTTTGCCGAGATGGTCCACTTCCAGGCCTTAAAGGCTGGCTTCGTTGGAATGCCCCCACCCGC
CCTGCCCAGGGGCCTTTTCCGTCTTGAGTCCTTTGAGTCCCTCCGAGGCGAGCGCCTGCTAAAGGATGCC
CTCCGTGAAGTGGAAGGCCTGAAAGACCTGCTGTTGGGCCCATGTGTGGACCTGCCTATGACATCCCGAG
AACCAGCCTTACCCTTGGACTCTGACAGCGGTAGCTGTCCTGGGGTCACTGCCAATGGAGAGGCCAGAAC
CTTCAATGGCTCCATTGAACTCTGTAGAGCAGACTCGGATTCCAGCCAGAAGGATCGGAATGGAAATCAG
TTGAGATCACCACAGGAGGAGGTGTTACAGCCATTGATCAATCTTTATGGACTTCTACATGGCCTGCAGG
CTGTTGTGGTCCAGCAGGAAAGACTGATGGAAGCCCTGTTCCCTGAGGGCCCTGAACGGTGGGAAAAGCT
ATCCCGAGCCAACTCTCGGGATGGTGAAGCTGGCCGGGCTGCGGTTGCTTCTGTAACTCCTGAGAAGCAG
GCCACGGAGCTGGCACTACTGCAGAGGCAACACACCCTGTTGCAGGAAGAGCTGCGGCGCTGCCAGCGGC
TCGGGGAAGAGCGGGCAACTGAAGCTGGCAGCCTGGAGGCCAGGCTCCGAGAGAGCGAGCAAGCCCGGGC
CCTGCTGGAGCGGGAGGCTGAAGAGATCCGCCGGCAGCTTGCAGCCTTGGGCCAAAACGAGCCACTCCCG
GCAGAAGCGCCCTGGGCTCGCAGGCCTCTGGACCCACGGCGCCGCAGCCTTCCAGCGGGCGACGCTTTAT
ACTTGAGCTTCAATCCCCCCCAGCCCAGTCGAGGCCATGACCGCCTGGATTTGCCTGTGACTGTTCGTTC
CCTCCACCGACCCTTTGATGACCGAGAGGCGCAAGAACTTGGTAGCCCCGAGGATCGACTACAGGACAGC
AGTGACCCTGATACTGGTAGTGAGGAGGAAGTCAGTAGCCGCCTGTCTCCACCTCACAGTCCTCGAGACT
TCACCCGAATGCAGGACATTCCTGAAGAGACAGAAAGCCGAGATGGGGAGCCCACAGCTTCAGAGAGCTA
A

Translation (956 aa):
MKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTCNVTIHNRCKDTLANCTKVKQKQQKAA
LLRNNTALQSVSLRTTTRERPTSAIYPSDSFRQSLLGSRRGLSSLSLAKSVSTTNIAGHFNDESPLGLRQ
ILSQSTDSLNMRNRTLSVESLIDEGVEVFYNELMSDFEMDEKDFEADSWSLAVDSSFLQQHKKEVMKKQD
VIYELIQTELHHVRTLKIMTRLFRTGMLEELQMEPEVVQGLFPCVDELSDIHTRFLNQLLERRRQALCPG
STRNFVIHRLGDLLISQFSGSNAEQMRKTYSEFCSRHTKALKLYKELYARDKRFQQFIRKMTRSAVLKRH
GVQECILLVTQRITKYPVLINRILQNSHGVEEEYQDLASALGLVKELLSNVDQDVHELEKEARLQEIYNR
MDPRAQTPVPGKGPFGRDELLRRKLIHEGCLLWKTATGRFKDVLLLLMTDVLVFLQEKDQKYIFTSLDKP
SVVSLQNLIVRDIANQAKGMFLISSGPPEMYEVHAASRDDRTTWIRVIQQSVRLCPSREDFPLIETEDKA
YLRRIKTKLQQKNQALVELLQKNVELFAEMVHFQALKAGFVGMPPPALPRGLFRLESFESLRGERLLKDA
LREVEGLKDLLLGPCVDLPMTSREPALPLDSDSGSCPGVTANGEARTFNGSIELCRADSDSSQKDRNGNQ
LRSPQEEVLQPLINLYGLLHGLQAVVVQQERLMEALFPEGPERWEKLSRANSRDGEAGRAAVASVTPEKQ
ATELALLQRQHTLLQEELRRCQRLGEERATEAGSLEARLRESEQARALLEREAEEIRRQLAALGQNEPLP
AEAPWARRPLDPRRRSLPAGDALYLSFNPPQPSRGHDRLDLPVTVRSLHRPFDDREAQELGSPEDRLQDS
SDPDTGSEEEVSSRLSPPHSPRDFTRMQDIPEETESRDGEPTASES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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