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Report for CCDS57222.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57222.1 Public Mus musculus 3 Arhgef2 23 108 98 CCDS HistoryNCBI Gene:16800Re-query CCDS DB by CCDS ID:57222.1Re-query CCDS DB by GeneID:16800See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57222.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107510.9 ENSMUSP00000103134.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107510.9Link to Ensembl Protein Viewer:ENSMUSP00000103134.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107510Re-query CCDS DB by Protein ID:ENSMUSP00000103134
Original member NCBI NM_001198912.1 NP_001185841.1 Updated not alive Link to Nucleotide Sequence:NM_001198912.1Link to Protein Sequence:NP_001185841.1Re-query CCDS DB by Nucleotide ID:NM_001198912Re-query CCDS DB by Protein ID:NP_001185841
Current member NCBI NM_001198912.2 NP_001185841.1 Accepted alive Link to Nucleotide Sequence:NM_001198912.2Link to Protein Sequence:NP_001185841.1Re-query CCDS DB by Nucleotide ID:NM_001198912Re-query CCDS DB by Protein ID:NP_001185841Link to BLAST:NP_001185841.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185841.1 958 Q60875-4 958 100% 0 0

Chromosomal Locations for CCDS 57222.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 88629805 88629931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88631911 88631978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88632276 88632339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88632913 88633042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88633258 88633367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88633500 88633646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88634410 88634660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88634983 88635108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88635601 88635718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88635855 88636103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88638271 88638347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88639323 88639492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88640283 88640350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88642426 88642626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88642926 88643039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643149 88643216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643345 88643380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643562 88643612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88643790 88644233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88646177 88646360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 88646790 88646863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2877 nt):
ATGAAGGAAGCTAAAGATGCCCGCTATACCAACGGCCACCTCTTCACCACCATCTCCGTCTCCGGCATGA
CCATGTGCTATGCCTGTAACAAGAGCATCACAGCCAAGGAAGCCCTCATTTGTCCTACATGTAACGTGAC
CATCCACAACCGCTGTAAAGACACCCTGGCCAACTGTACCAAGGTCAAGCAGAAGCAACAGAAAGCTGCA
CTGCTGAGGAACAACACTGCTTTGCAGTCTGTCTCCCTTCGAAGTAAGACGACCACCAGAGAGCGGCCAA
CGTCTGCCATTTACCCTTCCGACAGCTTCCGGCAGTCCCTCCTGGGTTCTCGGCGGGGCCTCTCCTCCTT
ATCTTTGGCCAAAAGTGTTTCCACTACCAACATTGCTGGACATTTCAATGATGAGTCTCCTCTGGGGCTG
CGTCAGATCCTCTCCCAGTCCACAGACTCCCTCAACATGCGGAACCGAACCCTGTCCGTGGAATCCCTTA
TTGATGAAGGTGTAGAAGTGTTCTACAATGAGCTGATGAGCGACTTTGAGATGGATGAGAAGGACTTTGA
GGCGGATTCTTGGAGCCTTGCCGTGGACAGCAGCTTCCTGCAGCAGCACAAAAAGGAAGTGATGAAGAAG
CAAGATGTCATCTATGAGCTGATCCAGACAGAGCTGCACCACGTGAGAACCTTGAAGATTATGACCCGCC
TCTTTCGCACTGGGATGCTGGAAGAGTTGCAGATGGAGCCAGAAGTGGTCCAGGGCCTGTTCCCCTGCGT
GGATGAACTCAGTGACATTCACACACGTTTCCTTAATCAGCTTCTGGAACGGCGGCGCCAGGCTCTATGT
CCAGGCAGCACCCGGAACTTTGTCATCCATCGTTTGGGTGACTTGCTCATCAGTCAGTTCTCAGGTTCCA
ATGCTGAGCAGATGCGCAAGACCTACTCAGAGTTCTGCAGCCGCCACACCAAGGCCTTAAAGCTCTATAA
GGAGCTGTATGCTCGAGACAAACGCTTCCAACAGTTCATCCGGAAAATGACCCGCTCAGCTGTGTTGAAG
CGGCATGGAGTTCAGGAATGCATTCTCCTGGTGACTCAGCGGATCACCAAATACCCTGTGCTCATCAACA
GAATCCTGCAGAATTCCCACGGGGTTGAAGAAGAGTACCAAGACTTGGCGTCAGCCCTAGGACTAGTGAA
GGAGTTGTTGTCCAATGTGGACCAGGATGTGCACGAGCTGGAGAAAGAGGCCCGCCTGCAGGAGATTTAC
AACCGAATGGATCCCCGGGCTCAGACCCCCGTACCTGGCAAGGGCCCCTTCGGCCGAGATGAACTTTTAC
GGAGAAAACTTATCCATGAAGGCTGCCTGCTCTGGAAGACAGCCACAGGCCGCTTCAAAGATGTCCTGTT
GCTGCTGATGACAGATGTGCTCGTGTTTCTCCAGGAAAAGGACCAGAAATACATTTTCACGTCTCTGGAC
AAGCCCTCAGTGGTGTCCTTGCAGAACCTCATCGTAAGAGACATAGCCAACCAGGCGAAAGGGATGTTTC
TGATTAGTTCTGGACCGCCTGAGATGTATGAGGTGCATGCAGCGTCCCGAGACGACCGGACTACCTGGAT
CCGTGTCATCCAGCAGAGTGTGCGCCTGTGCCCGTCCAGGGAGGACTTTCCTCTGATCGAGACAGAGGAT
AAGGCGTATCTCCGGAGGATCAAGACGAAACTGCAGCAGAAAAACCAGGCGCTAGTGGAGCTGCTACAGA
AGAATGTTGAGCTGTTTGCCGAGATGGTCCACTTCCAGGCCTTAAAGGCTGGCTTCGTTGGAATGCCCCC
ACCCGCCCTGCCCAGGGGCCTTTTCCGTCTTGAGTCCTTTGAGTCCCTCCGAGGCGAGCGCCTGCTAAAG
GATGCCCTCCGTGAAGTGGAAGGCCTGAAAGACCTGCTGTTGGGCCCATGTGTGGACCTGCCTATGACAT
CCCGAGAACCAGCCTTACCCTTGGACTCTGACAGCGGTAGCTGTCCTGGGGTCACTGCCAATGGAGAGGC
CAGAACCTTCAATGGCTCCATTGAACTCTGTAGAGCAGACTCGGATTCCAGCCAGAAGGATCGGAATGGA
AATCAGTTGAGATCACCACAGGAGGAGGTGTTACAGCCATTGATCAATCTTTATGGACTTCTACATGGCC
TGCAGGCTGTTGTGGTCCAGCAGGAAAGACTGATGGAAGCCCTGTTCCCTGAGGGCCCTGAACGGTGGGA
AAAGCTATCCCGAGCCAACTCTCGGGATGGTGAAGCTGGCCGGGCTGCGGTTGCTTCTGTAACTCCTGAG
AAGCAGGCCACGGAGCTGGCACTACTGCAGAGGCAACACACCCTGTTGCAGGAAGAGCTGCGGCGCTGCC
AGCGGCTCGGGGAAGAGCGGGCAACTGAAGCTGGCAGCCTGGAGGCCAGGCTCCGAGAGAGCGAGCAAGC
CCGGGCCCTGCTGGAGCGGGAGGCTGAAGAGATCCGCCGGCAGCTTGCAGCCTTGGGCCAAAACGAGCCA
CTCCCGGCAGAAGCGCCCTGGGCTCGCAGGCCTCTGGACCCACGGCGCCGCAGCCTTCCAGCGGGCGACG
CTTTATACTTGAGCTTCAATCCCCCCCAGCCCAGTCGAGGCCATGACCGCCTGGATTTGCCTGTGACTGT
TCGTTCCCTCCACCGACCCTTTGATGACCGAGAGGCGCAAGAACTTGGTAGCCCCGAGGATCGACTACAG
GACAGCAGTGACCCTGATACTGGTAGTGAGGAGGAAGTCAGTAGCCGCCTGTCTCCACCTCACAGTCCTC
GAGACTTCACCCGAATGCAGGACATTCCTGAAGAGACAGAAAGCCGAGATGGGGAGCCCACAGCTTCAGA
GAGCTAA

Translation (958 aa):
MKEAKDARYTNGHLFTTISVSGMTMCYACNKSITAKEALICPTCNVTIHNRCKDTLANCTKVKQKQQKAA
LLRNNTALQSVSLRSKTTTRERPTSAIYPSDSFRQSLLGSRRGLSSLSLAKSVSTTNIAGHFNDESPLGL
RQILSQSTDSLNMRNRTLSVESLIDEGVEVFYNELMSDFEMDEKDFEADSWSLAVDSSFLQQHKKEVMKK
QDVIYELIQTELHHVRTLKIMTRLFRTGMLEELQMEPEVVQGLFPCVDELSDIHTRFLNQLLERRRQALC
PGSTRNFVIHRLGDLLISQFSGSNAEQMRKTYSEFCSRHTKALKLYKELYARDKRFQQFIRKMTRSAVLK
RHGVQECILLVTQRITKYPVLINRILQNSHGVEEEYQDLASALGLVKELLSNVDQDVHELEKEARLQEIY
NRMDPRAQTPVPGKGPFGRDELLRRKLIHEGCLLWKTATGRFKDVLLLLMTDVLVFLQEKDQKYIFTSLD
KPSVVSLQNLIVRDIANQAKGMFLISSGPPEMYEVHAASRDDRTTWIRVIQQSVRLCPSREDFPLIETED
KAYLRRIKTKLQQKNQALVELLQKNVELFAEMVHFQALKAGFVGMPPPALPRGLFRLESFESLRGERLLK
DALREVEGLKDLLLGPCVDLPMTSREPALPLDSDSGSCPGVTANGEARTFNGSIELCRADSDSSQKDRNG
NQLRSPQEEVLQPLINLYGLLHGLQAVVVQQERLMEALFPEGPERWEKLSRANSRDGEAGRAAVASVTPE
KQATELALLQRQHTLLQEELRRCQRLGEERATEAGSLEARLRESEQARALLEREAEEIRRQLAALGQNEP
LPAEAPWARRPLDPRRRSLPAGDALYLSFNPPQPSRGHDRLDLPVTVRSLHRPFDDREAQELGSPEDRLQ
DSSDPDTGSEEEVSSRLSPPHSPRDFTRMQDIPEETESRDGEPTASES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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