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Report for CCDS57235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57235.1 Reviewed, update pending Mus musculus 3 Golph3l 23 108 98 CCDS HistoryNCBI Gene:229593Re-query CCDS DB by CCDS ID:57235.1Re-query CCDS DB by GeneID:229593See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 57235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060323.11 ENSMUSP00000058654.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060323.11Link to Ensembl Protein Viewer:ENSMUSP00000058654.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060323Re-query CCDS DB by Protein ID:ENSMUSP00000058654
Original member NCBI NM_001177669.1 NP_001171140.1 Updated not alive Link to Nucleotide Sequence:NM_001177669.1Link to Protein Sequence:NP_001171140.1Re-query CCDS DB by Nucleotide ID:NM_001177669Re-query CCDS DB by Protein ID:NP_001171140
Current member NCBI NM_001177669.2 NP_001171140.2 Pending alive Link to Nucleotide Sequence:NM_001177669.2Link to Protein Sequence:NP_001171140.2Re-query CCDS DB by Nucleotide ID:NM_001177669Re-query CCDS DB by Protein ID:NP_001171140Link to BLAST:NP_001171140.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171140.2 201 Q8R088-2 201 100% 0 0

Chromosomal Locations for CCDS 57235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95588967 95589134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95607906 95608037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95609672 95609786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95617044 95617471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGTGTTATTCCCTCTCTGCAACGAAGGATCAGGAAGTTTGTACTCTCTGTGTGGCTGAGAAGTTTTTCA
CCTACTGGAACCCGCCTAGGGTACGGGAAACAGGTGCCCTCCAAAACGAGAGCGCGAACTGCAGCCTACG
TCCCACTGCAGCTCAGGAGCAACGTCAGGGCTACACATCTTTCTGGAATGACTGTATATCATCTGGACTG
CGAGGAGGCATTCTGATAGAGCTGGCCATGCGGGGTCGAATCTATCTGGAACCTCCCACCATGCGTAAGA
AGCGACTCCTAGACAGAAAGGTCCTGCTGAAGTCAGACAGCCCAACAGGTGATGTTTTGCTGGATGAGAC
GCTCAAACACATTAAAGCAACTGAGCCAACCGAAACTGTGCAGACGTGGATCGAGCTACTCACTGGTGAG
ACATGGAACCCTTTCAAATTACAGTACCAGCTGAGAAATGTACGAGAACGAATTGCCAAGAACCTGGTGG
AAAAGGGCATTCTAACCACAGAGAAGCAGAATTTCCTGCTCTTCGACATGACCACTCATCCAGTGACCAA
TACGACAGAGAAACAGCGACTAATGAAAAAGCTTCAAGACAGTGTGCTAGAACGGTGGGTAAATGACCCT
CAGCGCATGGACAGGCGAACACTGGCCCTCCTGGTGCTGGCCCACTCTTCTGATGTGCTGGAGAATGTCT
TCTCTTGTCTGACAGATGATAAGTATGATGTGGCAATGAATCGAACCAAGGACCTAGTAGAACTGGACCC
TGAAGTGGAGGGGACAAAGCACAATGCTACAGAGATGATCTGGGCTGTGCTGGCAGCCTTCAACAAATCC
TAA

Translation (280 aa):
MCYSLSATKDQEVCTLCVAEKFFTYWNPPRVRETGALQNESANCSLRPTAAQEQRQGYTSFWNDCISSGL
RGGILIELAMRGRIYLEPPTMRKKRLLDRKVLLKSDSPTGDVLLDETLKHIKATEPTETVQTWIELLTGE
TWNPFKLQYQLRNVRERIAKNLVEKGILTTEKQNFLLFDMTTHPVTNTTEKQRLMKKLQDSVLERWVNDP
QRMDRRTLALLVLAHSSDVLENVFSCLTDDKYDVAMNRTKDLVELDPEVEGTKHNATEMIWAVLAAFNKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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