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Report for CCDS57265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57265.1 Public Mus musculus 4 Spmip6 23 108 98 CCDS HistoryNCBI Gene:73721Re-query CCDS DB by CCDS ID:57265.1Re-query CCDS DB by GeneID:73721See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57265.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095126.4 ENSMUSP00000092744.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095126.4Link to Ensembl Protein Viewer:ENSMUSP00000092744.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095126Re-query CCDS DB by Protein ID:ENSMUSP00000092744
Original member Current member NCBI NM_001253788.1 NP_001240717.1 Accepted alive Link to Nucleotide Sequence:NM_001253788.1Link to Protein Sequence:NP_001240717.1Re-query CCDS DB by Nucleotide ID:NM_001253788Re-query CCDS DB by Protein ID:NP_001240717Link to BLAST:NP_001240717.1

Chromosomal Locations for CCDS 57265.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41505113 41505168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41505568 41505654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41507521 41507593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41508517 41508629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41511432 41511576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41517028 41517162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGTTCCTCTTCTCCCGGAAGACCAAGACCCCCATCAGCACCTACAGTGACTCCTACAGGGCTCCTACCT
CCATCAAGGAGGTCTATAAGGACCCACCACTATGGGCCTGGGAAGCCAACAAGTTTGTGACCCCAGGTCT
GACTCAGACTATGCACCGCCACGTGGACCCTGAGGCCCTGCAGAAGATGACCAAATGTGCCGCACAGGAC
TACACCTATAAGAGTTCCATATCAGGTCACCCTTATTTGCCTGAGAAATACTGGCTCTCTCCAGATGAAG
AGGACAAATGCTGTCCGAGCTACCTGGACAATGACCGGTACAACACGTGGAAGACGAGTCCTTGCAGCAA
CTACTGGAACAAGTATACCGGCTGTCTTCCTCGACTGTCCAAGGACACCGGGATGGAGTCAGTTCGAGGA
ATGCCGTTGGAATATCCTCCTAAGCAGGAGCGCCTCAACGCCTACGGAGTGTGTCGCCCTTCGGTCACCG
GCCAGGAATGCAATGTGCTGTTACAACTCCCCCGCCATCATTTTACCCGTATCCCAACCTTAGATGGGAC
ACAAGTCACTTCAAGAAGACTGGTGGTTCCCAGAGAAACAACTATGTAG

Translation (202 aa):
MFLFSRKTKTPISTYSDSYRAPTSIKEVYKDPPLWAWEANKFVTPGLTQTMHRHVDPEALQKMTKCAAQD
YTYKSSISGHPYLPEKYWLSPDEEDKCCPSYLDNDRYNTWKTSPCSNYWNKYTGCLPRLSKDTGMESVRG
MPLEYPPKQERLNAYGVCRPSVTGQECNVLLQLPRHHFTRIPTLDGTQVTSRRLVVPRETTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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