NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57380.1 Public Mus musculus 5 Ddx55 23 108 98 CCDS HistoryNCBI Gene:67848Re-query CCDS DB by CCDS ID:57380.1Re-query CCDS DB by GeneID:67848See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 57380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111438.1 ENSMUSP00000107065.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111438.1Link to Ensembl Protein Viewer:ENSMUSP00000107065.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111438Re-query CCDS DB by Protein ID:ENSMUSP00000107065
Original member Current member NCBI NM_001190795.1 NP_001177724.1 Accepted alive Link to Nucleotide Sequence:NM_001190795.1Link to Protein Sequence:NP_001177724.1Re-query CCDS DB by Nucleotide ID:NM_001190795Re-query CCDS DB by Protein ID:NP_001177724Link to BLAST:NP_001177724.1

Chromosomal Locations for CCDS 57380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 124552932 124553039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124554543 124554593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124554671 124554757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124556757 124556848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124556962 124557024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124558022 124558171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124559128 124559317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124560718 124560800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124561906 124562037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124562590 124562682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124566381 124566495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124566846 124567002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124567835 124568127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 124568556 124568732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1791 nt):
ATGGAGCACGTGACGGAGGGTGCCTGGGAGTCGCTGCAGGTGCCGCTGCACCCTCGGGTGCTCGGTGCAC
TGCGCGAGTTGGGCTTCCCGCACATGACGCCGGTGCAGTCTGCCACCATCCCTCTGTTCATGAAAAACAA
AGATGTTGCCGCAGAGGCTGTGACAGGTAGTGGGAAAACCCTGGCTTTTGTTATCCCCATTCTGGAGATT
CTTCTGAGAAGGGAGGAGAAGTTAAAGAAGAACCAGGTAGGAGCCATCGTCATCACCCCGACTCGCGAGC
TGGCCATTCAGATTGATGAAGTCCTGTCACACTTCACGAAGCACTTTCCGCAGTTCAGCCAGATTTTGTG
GATTGGAGGCCGGAACCCTGGAGAAGATGTGGAGAGGTTCAAGCAGCACGGTGGGAACATCATTGTGGCA
ACCCCTGGGCGCCTGGAGGACATGTTCCGGAGGAAGGCTGAGGGTCTGGACCTGGCCAGCTGTGTGAAGA
GCTTGGATGTGCTGGTGCTGGACGAGGCAGACAGACTGCTCGACATGGGCTTTGAGGCAAGCATAAACAC
AATCCTGGAGTTTTTGCCAAAGCAGAGAAGAACAGGCCTCTTCTCAGCCACGCAGACACAGGAAGTGGAG
AACTTAGTGCGAGCAGGCCTCCGGAACCCTGTCCGAATCTCTGTGAAGGAGAAGGGTGTGGCAGCCAGCA
GTACCCAGAAGACCCCGTCCCGCCTGGAGAACCACTATATGATCTGTAAGGCAGATGAGAAATTCAACCA
GCTGGTCCATTTCCTTCGGAGCCGTCAGCAGGAGAAGCACCTGGTCTTCTTCAGCACGTGTGCGTGTGTG
GAATACTATGGGAAGGCCCTGGAGGCGCTGTTGAAGAAAGTGAAGATCCTGTGCATCCACGGGAAGATGA
AGTACAAGCGCAATAAGATCTTCATGGAGTTCCGCAAGCTGCAGAGTGGGATCCTGGTGTGCACTGACGT
GATGGCCCGGGGAATTGATATTCCCGAAGTAAACTGGGTTTTGCAGTATGACCCTCCCAGCAATGCCAGT
GCCTTCGTGCATCGATGTGGACGCACAGCCCGCATTGGCCACGGTGGCAGTGCCCTGGTGTTCCTGCTGC
CCATGGAGGAGGCCTACATCAACTTCTTGGCCATCAACCAGAAAGAGATGAGCCTCCAGAGAAACACCAT
AGACCTTCTGCCGAAGCTCCGGGCCATGGCTCTGGCTGACAGAGCTGTGTTCGAGAAGGGCATGAAAGCC
TTTGTGTCCTTTGTGCAGGCTTATGCGAAGCACGAGTGCAGCCTCATCTTCCGGCTGAAGGATCTTGACT
TTGCCGGGCTTGCTCGAGGCTTTGCCCTGCTCAGGATGCCCAGGATGCCAGAGCTAAGGGGGAAGCAGTT
TCCTGACTTTGTACCAGTGGACATCGATACCGACACCATTCCATTTAAAGATAAAATTAGAGAAAAACAG
AGGCAGAAACTTCTGGAACAAAAAAGAAAAGAGAGGTCAGAAAATGAAGGGAGGAAAAAATTCATCAAAA
ATAAAGCTTGGTCGAAGCAGAAGGCCAAAAAGGAAAGGAAGAAGAAGATGAATGCAAAGAGGAAGAAGGA
TGAGGGTTCTGATATTGACGATGAAGACATGGAGGAACTCCTTAATGATACAAGGCTCTTGAAGAAATTT
AAAAAAGGTAAAATCACAGAAGAAGAATTTGAGAAGGGGCTGTTGACAAGTGCCAAAAGGACAGTCCAGC
TGACAGATTTAGGTGTCTCAGACTTGGAAGAGGACAGTTGA

Translation (596 aa):
MEHVTEGAWESLQVPLHPRVLGALRELGFPHMTPVQSATIPLFMKNKDVAAEAVTGSGKTLAFVIPILEI
LLRREEKLKKNQVGAIVITPTRELAIQIDEVLSHFTKHFPQFSQILWIGGRNPGEDVERFKQHGGNIIVA
TPGRLEDMFRRKAEGLDLASCVKSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVE
NLVRAGLRNPVRISVKEKGVAASSTQKTPSRLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACV
EYYGKALEALLKKVKILCIHGKMKYKRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNAS
AFVHRCGRTARIGHGGSALVFLLPMEEAYINFLAINQKEMSLQRNTIDLLPKLRAMALADRAVFEKGMKA
FVSFVQAYAKHECSLIFRLKDLDFAGLARGFALLRMPRMPELRGKQFPDFVPVDIDTDTIPFKDKIREKQ
RQKLLEQKRKERSENEGRKKFIKNKAWSKQKAKKERKKKMNAKRKKDEGSDIDDEDMEELLNDTRLLKKF
KKGKITEEEFEKGLLTSAKRTVQLTDLGVSDLEEDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH