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Report for CCDS57452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57452.1 Public Mus musculus 6 Clec1b 23 108 98 CCDS HistoryNCBI Gene:56760Re-query CCDS DB by CCDS ID:57452.1Re-query CCDS DB by GeneID:56760See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112081.8 ENSMUSP00000107712.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112081.8Link to Ensembl Protein Viewer:ENSMUSP00000107712.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112081Re-query CCDS DB by Protein ID:ENSMUSP00000107712
Original member Current member NCBI NM_001204239.1 NP_001191168.1 Accepted alive Link to Nucleotide Sequence:NM_001204239.1Link to Protein Sequence:NP_001191168.1Re-query CCDS DB by Nucleotide ID:NM_001204239Re-query CCDS DB by Protein ID:NP_001191168Link to BLAST:NP_001191168.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191168.1 197 Q9JL99-2 197 100% 0 0

Chromosomal Locations for CCDS 57452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129397615 129397678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129401472 129401597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129401742 129401893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129403561 129403667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129405107 129405251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGCAGGATGAAGATGGGTATATCACTTTAAACATCAAGCCCCGGAAACAAGCTCTCAGCTCAGCGGTCA
CACAGCAAAAGTATCTACTGGCGGAGAAGGAAAATCTCTCAGCGACTCTGCAACAATTGGCCAAGAAATT
CTGCCAAGAGTTGATTAGACAATCAGAAATTAAGACAAAGAGCACTTTTGAGCACAAGTGCAGCCCCTGC
GCCACGAAGTGGAGATACCATGGAGATAGTTGCTACGGGTTCTTCAGGCGTAACCTAACATGGGAAGAGA
GCAAGCAGTATTGCACTGAGCAGAATGCAACACTTGTGAAGACTGCCAGCCAGAGCACCCTGGACTACAT
TGCAGAAAGGATTACTTCAGTCCGTTGGATTGGATTATCACGCCAGAACTCTAAGAAAGACTGGATGTGG
GAGGATAGCTCAGTTCTTCGCAAGAACGGGATTAATCTTTCTGGGAATACAGAAGAAAACATGAATTGTG
CTTATCTTCATAATGGAAAAATCCATCCAGCTTCCTGTAAAGAGAGACATTACTTAATATGTGAGAGAAA
TGCTGGCATGACAAGAGTGGACCAACTGCTTTAA

Translation (197 aa):
MQDEDGYITLNIKPRKQALSSAVTQQKYLLAEKENLSATLQQLAKKFCQELIRQSEIKTKSTFEHKCSPC
ATKWRYHGDSCYGFFRRNLTWEESKQYCTEQNATLVKTASQSTLDYIAERITSVRWIGLSRQNSKKDWMW
EDSSVLRKNGINLSGNTEENMNCAYLHNGKIHPASCKERHYLICERNAGMTRVDQLL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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