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Report for CCDS57462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57462.1 Public Mus musculus 6 Gprc5d 23 108 98 CCDS HistoryNCBI Gene:93746Re-query CCDS DB by CCDS ID:57462.1Re-query CCDS DB by GeneID:93746See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032327.13 ENSMUSP00000032327.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032327.13Link to Ensembl Protein Viewer:ENSMUSP00000032327.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032327Re-query CCDS DB by Protein ID:ENSMUSP00000032327
Original member Current member NCBI NM_001205396.1 NP_001192325.1 Accepted alive Link to Nucleotide Sequence:NM_001205396.1Link to Protein Sequence:NP_001192325.1Re-query CCDS DB by Nucleotide ID:NM_001205396Re-query CCDS DB by Protein ID:NP_001192325Link to BLAST:NP_001192325.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192325.1 344 Q9JIL6-1 344 100% 0 0

Chromosomal Locations for CCDS 57462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 135106194 135106265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135107731 135107798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 135116013 135116907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGTATGAGGACTGCGTGAAGTCCACAGAAGACTATTACCTCTTCTGTGACAACGAGGGGCCATGGGCCA
TTGTTCTGGAGTCCTTGGCAGTGATTGGCATAGTGGTTACCATATTGCTACTCCTGGCATTTCTGTTCCT
CATGCGGAAGGTTCAGGACTGCAGCCAGTGGAACGTGCTTCCCACTCAGTTCCTCTTCCTGCTGGCTGTG
CTCGGGCTCTTCGGACTTACTTTTGCCTTCATCATCCAACTCAACCATCAAACTGCCCCTGTTCGCTACT
TCCTCTTTGGGGTTCTCTTTGCTATCTGCTTCTCCTGCCTCCTGGCTCATGCCTCCAACCTGGTGAAGCT
GGTCCGGGGTAGAGTCTCCTTCTGCTGGACAACAATTCTGTTCATTGCTATCGGTGTCAGCCTGTTGCAG
ACCATCATTGCGATAGAGTATGTGACCCTCATCATGACCAGAGGCTTGATGTTCGAGCATATGACACCGT
ATCAGCTCAATGTGGACTTTGTCTGTCTCCTGATCTATGTCCTCTTCCTGATGGCCCTCACTTTCTTCGT
CTCCAAGGCCACCTTCTGTGGCCCATGTGAGAACTGGAAACAGCACGGAAGGCTCATATTTGCTACTGTG
CTGGTCTCTATCATTATCTGGGTGGTGTGGATCTCCATGCTCTTGAGAGGCAACCCCCAGCTCCAGCGAC
AGCCCCACTGGGACGATGCAGTCATCTGCATTGGCCTGGTCACCAACGCTTGGGTCTTCCTGCTGATCTA
CATCATCCCTGAGCTGAGCATACTCTACAGGTCATGTAGGCAGGAGTGTCCTACACAAGGCAACGTCTGC
CAGGTCCCTGTCTACCAACGCAGCTTCAGGATGGATACCCAGGAACCCACCAGAGCCCGAGACAGTGATG
GAGCTCAGGAGGATGTAGCACTAACTGCATATGGTACTCCCATTCAGCTGCAGAGTGCTGATCCCAGCCG
GGAGTATCTCATCCCATCAGCTACACTAAGCCCACAGCAAGATGCAGGATTGTAA

Translation (344 aa):
MYEDCVKSTEDYYLFCDNEGPWAIVLESLAVIGIVVTILLLLAFLFLMRKVQDCSQWNVLPTQFLFLLAV
LGLFGLTFAFIIQLNHQTAPVRYFLFGVLFAICFSCLLAHASNLVKLVRGRVSFCWTTILFIAIGVSLLQ
TIIAIEYVTLIMTRGLMFEHMTPYQLNVDFVCLLIYVLFLMALTFFVSKATFCGPCENWKQHGRLIFATV
LVSIIIWVVWISMLLRGNPQLQRQPHWDDAVICIGLVTNAWVFLLIYIIPELSILYRSCRQECPTQGNVC
QVPVYQRSFRMDTQEPTRARDSDGAQEDVALTAYGTPIQLQSADPSREYLIPSATLSPQQDAGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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