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Report for CCDS57586.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57586.1 Public Mus musculus 7 Sez6l2 23 108 98 CCDS HistoryNCBI Gene:233878Re-query CCDS DB by CCDS ID:57586.1Re-query CCDS DB by GeneID:233878See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57586.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106332.2 ENSMUSP00000101939.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106332.2Link to Ensembl Protein Viewer:ENSMUSP00000101939.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106332Re-query CCDS DB by Protein ID:ENSMUSP00000101939
Original member Current member NCBI NM_001252567.1 NP_001239496.1 Accepted alive Link to Nucleotide Sequence:NM_001252567.1Link to Protein Sequence:NP_001239496.1Re-query CCDS DB by Nucleotide ID:NM_001252567Re-query CCDS DB by Protein ID:NP_001239496Link to BLAST:NP_001239496.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239496.1 863 Q4V9Z5-3 863 100% 0 0

Chromosomal Locations for CCDS 57586.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126951038 126951116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126952000 126952131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126952954 126953073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126953385 126953524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126953715 126953916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126958269 126958454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126959047 126959215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126959791 126959954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126961737 126961937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126962353 126962491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126963265 126963461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126963563 126963757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126966725 126966916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126967014 126967205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126967707 126967745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126967927 126968044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126968160 126968256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126970053 126970082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2592 nt):
ATGGGGACTCCCAAGGCCCAGCACCCGCCGCCTTCCCAGCTGCTGCTCCTAATTCTGCTGAGCTGTGCCT
GGATTGAGGGTCTGCCCCTGAAGGAGGATGAGATGATGCCAGAGCCTGGAAGTGAGACTCCCACAGTGGC
CTCTGAGGACCTGGCTGAGCTGCTCCATGGGGCTTTGCTGCGGAAGGGCCCAGAGATCGGCTTCTTGCCG
GCCCCGCCCCCGCCTGGCCCCGCCTCCCCAGTCCCACCCCTCAGGCCTGAGGGAGGAGAGGAGGAAACCA
CCACCACCATCATCACCACAACAACTGTCACCACCACTGTCACCAGCCCAGTTCTGTGCAATAACAACAT
CTCGGAGGGCGAAGGGTTTGTGGAGTCTCCGGACTTGGGGAGCACTGCCAGCCGCTCCGTGGAGCTCCTA
GATTGCACCTACAGCATCCATGTCTACCCTGGTTATGGCATTGAGATTCAGGTGCAGACACTCAACCTGT
CTCAGGAGGAAGAACTTCTGGTGTTGGCCGGTGGGGGTTCTCCAGGCCTGGCCCCCAGACTCCTGGCCAA
TTCCTCCATGCTGGGAGAAGGACAAGTGCTGCGGAGCCCAACAAACCGGCTGCTCCTGCATTTCCAGAGT
CCTCGAGTCCCAAGGGGCAATGGCTTCAGGATTCACTATCAGGCATACCTTCTGAGCTGCGGCTTCCCAC
CCCGGCCAGCCCACGGGGATGTGAGCGTGACAGACTTGCATCCTGGGGGCACTGCCACCTTCCACTGTGA
CTCAGGATACCAGCTACAGGGTGAGGAGACCCTCATTTGCCTCAATGGTACCCGGCCAGCCTGGACTGGT
GAACCCCCTAGCTGTACAGCATCTTGTGGTGGCACCATCCACAATGCCACACTGGGTCGCATTGTATCCC
CTGAGCCTGGGGGAGCTGCAGGGCCCAACCTCACCTGCCGCTGGGTCATTGAAGCGGCCGAGGGACGCCG
GCTTCACCTACACTTTGAGAGAGTCTCACTGGATGAGGACAATGACCGGCTGATGGTGCGCTCAGGGGGA
AGCCCCCTGTCCCCTGTGATTTACGACTCTGACATGGATGATGTCCCTGAACGCGGTCTCATCAGTGATG
CCCAGTCCCTCTACGTAGAACTGCTTTCAGAGACACCAGCCAACCCCCTGCTGCTCAGCCTCCGATTTGA
AGCCTTTGAGGAGGACCGCTGCTTCCCCCCGTTCCTGGCTCACGGCAATGTGACCACTACAGATCCTGAG
TTCCACCCAGGAGCACTGGCCACCTTCTCATGCCTCCCAGGATATGCTCTGGAGCCACCAGGACCCCCCA
ATGCTATCGAATGTGTGGATCCCACCGAACCCCACTGGAACGACACAGAGCCAGCCTGCAAGGCCATGTG
TGGAGGAGAGCTGTCTGAGCCAGCTGGTGTGGTACTCTCTCCCGACTGGCCCCAGAGTTACAGCCCTGGC
CAAGACTGCGTGTGGGGCCTGCACGTCCAGGAAGAGAAGCGCATCTTGCTCCAAGTTGAAATCTTGAATG
TTCGCGAAGGGGATATGCTAACACTGTTCGACGGGGACGGTCCGAGCGCTCGAGTCCTGGCCCAGCTGCG
AGGACCTCAGCCGCGCCGCCGCCTCCTCTCCTCTGGACCTGATCTCACTCTGCAGTTTCAGGCACCCCCT
GGTCCCCCAAATCCGGGCCTAGGCCAGGGTTTCGTGTTACATTTCAAAGAGGTCCCGAGAAACGATACGT
GCCCGGAGCTACCACCACCTGAGTGGGGCTGGAGGACAGCATCCCACGGGGACCTTATCCGGGGTACAGT
GCTCACCTATCAATGCGAGCCTGGCTATGAACTACTGGGATCAGACATCCTCACTTGCCAATGGGACCTG
TCCTGGAGCGCGGCGCCACCTGCCTGCCAAAAGATCATGACTTGTGCTGACCCTGGCGAGATCACCAATG
GCCATCGGACTGCCTCAGATGCTGGTTTCCCTGTGGGCTCCCACGTCCAGTATCGCTGTCTGCCAGGGTA
CAGCCTGGAAGGAGCAGCTGTGCTCACCTGCTACAGCCGGGACACAGGCACACCCAAGTGGAGTGATCGG
GTCCCCAAATGCGCCTTAAAGTACGAGCCGTGCCTGAACCCCGGTGTTCCTGAGAATGGTTACCAAACTC
TGTACAAGCATCACTACCAAGCGGGCGAGTCGCTACGCTTCTTCTGCTACGAGGGCTTTGAGCTCATCGG
CGAGGTCACCATCACATGTGTACCCGGTCACCCCTCCCAGTGGACCAGCCAGCCCCCACTCTGCAAAGTG
GCCTATGAGGAGCTCCTGGACAACCGAAAACTGGAAGTGACCCAGACTACAGACCCATCACGGCAGCTGG
AGGGTGGTAATCTCGCTTTGGCCATCCTGTTGCCCCTGGGCTTGGTCATTGTCCTTGGCATTGGCGTTTA
CATATACTACACTAAGCTACAAGGAAAATCCCTCTTTGGCTTCTCGGGTTCTCACTCTTACAGTCCCATT
ACGGTGGAGTCAGACTTCAGCAACCCACTGTATGAAGCTGGGGATACGAGGGAGTATGAAGTTTCCATCT
GA

Translation (863 aa):
MGTPKAQHPPPSQLLLLILLSCAWIEGLPLKEDEMMPEPGSETPTVASEDLAELLHGALLRKGPEIGFLP
APPPPGPASPVPPLRPEGGEEETTTTIITTTTVTTTVTSPVLCNNNISEGEGFVESPDLGSTASRSVELL
DCTYSIHVYPGYGIEIQVQTLNLSQEEELLVLAGGGSPGLAPRLLANSSMLGEGQVLRSPTNRLLLHFQS
PRVPRGNGFRIHYQAYLLSCGFPPRPAHGDVSVTDLHPGGTATFHCDSGYQLQGEETLICLNGTRPAWTG
EPPSCTASCGGTIHNATLGRIVSPEPGGAAGPNLTCRWVIEAAEGRRLHLHFERVSLDEDNDRLMVRSGG
SPLSPVIYDSDMDDVPERGLISDAQSLYVELLSETPANPLLLSLRFEAFEEDRCFPPFLAHGNVTTTDPE
FHPGALATFSCLPGYALEPPGPPNAIECVDPTEPHWNDTEPACKAMCGGELSEPAGVVLSPDWPQSYSPG
QDCVWGLHVQEEKRILLQVEILNVREGDMLTLFDGDGPSARVLAQLRGPQPRRRLLSSGPDLTLQFQAPP
GPPNPGLGQGFVLHFKEVPRNDTCPELPPPEWGWRTASHGDLIRGTVLTYQCEPGYELLGSDILTCQWDL
SWSAAPPACQKIMTCADPGEITNGHRTASDAGFPVGSHVQYRCLPGYSLEGAAVLTCYSRDTGTPKWSDR
VPKCALKYEPCLNPGVPENGYQTLYKHHYQAGESLRFFCYEGFELIGEVTITCVPGHPSQWTSQPPLCKV
AYEELLDNRKLEVTQTTDPSRQLEGGNLALAILLPLGLVIVLGIGVYIYYTKLQGKSLFGFSGSHSYSPI
TVESDFSNPLYEAGDTREYEVSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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