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Report for CCDS57589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57589.1 Public Mus musculus 7 Itgal 23 108 98 CCDS HistoryNCBI Gene:16408Re-query CCDS DB by CCDS ID:57589.1Re-query CCDS DB by GeneID:16408See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57589.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106306.8 ENSMUSP00000101913.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106306.8Link to Ensembl Protein Viewer:ENSMUSP00000101913.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106306Re-query CCDS DB by Protein ID:ENSMUSP00000101913
Original member Current member NCBI NM_001253872.1 NP_001240801.1 Accepted alive Link to Nucleotide Sequence:NM_001253872.1Link to Protein Sequence:NP_001240801.1Re-query CCDS DB by Nucleotide ID:NM_001253872Re-query CCDS DB by Protein ID:NP_001240801Link to BLAST:NP_001240801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240801.1 1162 P24063-1 1162 100% 0 0

Chromosomal Locations for CCDS 57589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127296469 127296523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127297618 127297717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127299534 127299628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127299738 127299805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127300890 127301007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127301124 127301254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127302011 127302159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127304933 127305065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127305206 127305356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127306648 127306721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127306814 127306946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127310185 127310336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127310626 127310763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127311218 127311415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127311543 127311673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127314059 127314219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127314312 127314463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127317277 127317366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127321895 127321948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127322052 127322122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127322481 127322622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127324545 127324655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127325022 127325101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127325197 127325283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127327709 127327784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127328187 127328300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127328499 127328555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127328653 127328754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127329425 127329520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127330129 127330239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127333452 127333610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3489 nt):
ATGAGTTTCCGGATTGCGGGCCCCAGACTTTTGCTACTGGGACTCCAGCTGTTTGCCAAGGCCTGGAGCT
ACAACCTGGACACACGGCCTACGCAGAGCTTCTTGGCACAAGCTGGAAGACATTTTGGGTACCAGGTCTT
GCAGATTGAAGATGGGGTTGTCGTGGGAGCCCCAGGTGAGGGGGACAACACGGGAGGCCTCTATCACTGC
CGAACAAGCAGCGAGTTCTGCCAGCCAGTCAGCCTACATGGTTCTAACCATACCTCCAAGTACTTGGGAA
TGACGCTGGCAACAGATGCCGCCAAGGGAAGCCTTTTGGCCTGTGACCCTGGACTGTCTCGGACATGCGA
TCAGAACACTTACCTCAGTGGCCTCTGCTACCTCTTCCCCCAGAGTCTGGAGGGACCTATGTTACAAAAT
CGTCCCGCCTATCAGGAATGTATGAAGGGCAAAGTCGACCTGGTGTTTCTGTTCGATGGCTCACAGAGCT
TGGATAGAAAGGACTTTGAAAAAATCCTGGAATTCATGAAGGATGTGATGAGGAAGCTCAGCAATACTTC
CTACCAGTTTGCTGCCGTCCAGTTCTCCACAGACTGCAGAACAGAATTTACTTTCTTGGACTACGTTAAG
CAGAACAAGAACCCCGATGTTCTGCTAGGCAGCGTGCAGCCCATGTTCTTGCTGACCAATACCTTTCGTG
CCATCAACTATGTGGTGGCACACGTGTTCAAAGAAGAGTCTGGTGCCAGGCCGGATGCTACCAAGGTGCT
TGTCATCATTACAGACGGGGAGGCAAGTGATAAAGGCAACATCAGTGCGGCCCACGACATAACCCGCTAC
ATCATCGGGATTGGCAAGCATTTTGTGAGCGTACAAAAGCAAAAGACGCTCCACATATTTGCCTCAGAAC
CTGTAGAGGAATTTGTGAAGATTCTGGACACCTTTGAGAAGCTGAAGGATCTTTTTACTGACCTGCAGAG
GAGGATTTATGCTATTGAGGGCACAAACAGACAGGACCTGACATCCTTTAACATGGAACTCTCCTCCAGC
GGGATCAGCGCAGACCTCAGCAAGGGCCATGCAGTTGTGGGAGCTGTTGGGGCTAAGGATTGGGCCGGGG
GCTTTCTGGACCTGCGTGAAGACCTGCAGGGTGCCACATTTGTTGGGCAGGAACCGCTGACCTCAGATGT
GAGAGGGGGCTACCTGGGTTACACTGTGGCCTGGATGACCTCCCGGAGCTCCAGACCCCTGCTGGCAGCA
GGAGCCCCACGGTACCAGCATGTGGGACAAGTACTGCTTTTCCAAGCCCCAGAGGCTGGAGGACGTTGGA
ACCAAACCCAGAAGATAGAAGGGACTCAGATCGGATCTTACTTTGGTGGGGAACTATGTAGTGTTGACCT
GGACCAAGATGGCGAGGCAGAGCTGCTGCTGATTGGAGCACCCCTGTTCTTTGGGGAGCAGAGAGGAGGC
CGAGTGTTCACTTACCAGAGAAGACAGTCGCTGTTTGAAATGGTCTCAGAGCTACAGGGTGACCCTGGCT
ACCCGCTTGGTCGGTTTGGAGCCGCCATAACTGCCCTGACGGACATCAATGGGGATAGGCTGACTGATGT
GGCTGTGGGAGCCCCTTTGGAGGAGCAGGGGGCTGTGTACATCTTCAATGGGAAGCCTGGTGGGCTCAGT
CCCCAGCCAAGCCAGCGTATACAAGGAGCCCAGGTGTTCCCAGGAATCCGGTGGTTTGGCCGCTCCATCC
ATGGGGTGAAGGACCTTGGAGGGGACAGGCTGGCAGATGTGGTTGTAGGAGCTGAGGGTCGGGTGGTTGT
GCTGAGCTCCAGGCCGGTGGTGGATGTGGTCACTGAGCTGTCGTTCTCCCCAGAGGAAATCCCAGTGCAC
GAGGTGGAGTGCTCCTACTCAGCCAGGGAGGAGCAGAAACACGGAGTCAAGCTCAAGGCATGCTTCCGGA
TCAAGCCCCTCACGCCACAGTTTCAAGGTCGCCTGCTTGCCAACCTCAGCTACACCCTGCAGCTGGATGG
CCATCGGATGAGGAGCCGAGGGTTGTTCCCAGATGGAAGCCACGAGCTCAGTGGAAACACCTCCATCACC
CCAGATAAATCCTGCTTGGACTTCCACTTCCACTTCCCGATCTGCATTCAAGACCTCATCTCCCCTATCA
ATGTCTCCCTGAATTTCTCTCTTTTGGAGGAAGAAGGAACACCAAGGGACCAAAAGGTGGGCAGGGCCAT
GCAGCCTATCCTGAGACCTTCAATCCACACAGTGACTAAGGAGATCCCTTTTGAGAAGAACTGTGGTGAA
GATAAGAAGTGTGAGGCAAACCTGACCCTGTCATCCCCTGCCAGATCTGGACCCCTGCGTCTGATGTCCT
CTGCCAGCCTTGCTGTGGAGTGGACACTGAGCAACTCAGGGGAAGATGCCTACTGGGTGCGATTAGACCT
GGACTTCCCTCGGGGACTCTCCTTCCGGAAAGTGGAGATGCTTCAGCCACACAGCCGAATGCCTGTGAGC
TGCGAGGAGCTCACCGAGGGGTCAAGTCTCCTGACTAAGACACTGAAATGCAATGTAAGCTCTCCCATCT
TCAAAGCAGGCCAGGAGGTGAGCCTCCAGGTGATGTTTAACACGCTACTCAACAGCTCCTGGGAAGACTT
CGTTGAGCTGAATGGCACTGTGCACTGTGAGAATGAGAACTCAAGCCTCCAGGAGGACAACTCAGCCGCC
ACCCACATTCCTGTCCTGTACCCTGTCAACATCCTTACTAAGGAGCAGGAGAACTCCACTCTCTATATCA
GTTTCACCCCTAAAGGTCCCAAGACCCAACAAGTCCAGCATGTCTACCAGGTGAGGATTCAGCCATCTGC
CTATGACCACAACATGCCCACACTAGAGGCCTTGGTTGGGGTGCCCTGGCCTCACAGTGAGGACCCCATC
ACATACACATGGAGTGTACAGACGGATCCCCTTGTCACTTGCCACAGCGAGGACCTGAAGAGGCCGTCCA
GCGAAGCTGAGCAGCCTTGTCTGCCTGGAGTCCAGTTCCGCTGTCCAATTGTCTTCAGGCGGGAGATCCT
CATCCAAGTGACGGGGACCGTGGAACTCTCCAAGGAAATCAAGGCCTCCTCCACACTCAGCCTCTGCAGC
TCACTCTCCGTCTCCTTCAACAGCAGCAAGCATTTCCATTTGTATGGCAGCAAAGCCTCCGAGGCCCAGG
TCCTCGTGAAGGTTGACCTGATCCACGAGAAGGAGATGCTTCACGTGTACGTACTCAGCGGCATTGGGGG
CCTCGTGCTTCTGTTCCTGATTTTCCTGGCGCTCTACAAGGTTGGCTTCTTCAAACGGAACCTGAAGGAG
AAGATGGAGGCTGATGGAGGTGTTCCAAATGGAAGCCCTCCAGAAGACACTGACCCTCTGGCAGTACCTG
GGGAAGAGACCAAAGATATGGGCTGTCTAGAGCCCCTCCGGGAGAGTGACAAGGACTAA

Translation (1162 aa):
MSFRIAGPRLLLLGLQLFAKAWSYNLDTRPTQSFLAQAGRHFGYQVLQIEDGVVVGAPGEGDNTGGLYHC
RTSSEFCQPVSLHGSNHTSKYLGMTLATDAAKGSLLACDPGLSRTCDQNTYLSGLCYLFPQSLEGPMLQN
RPAYQECMKGKVDLVFLFDGSQSLDRKDFEKILEFMKDVMRKLSNTSYQFAAVQFSTDCRTEFTFLDYVK
QNKNPDVLLGSVQPMFLLTNTFRAINYVVAHVFKEESGARPDATKVLVIITDGEASDKGNISAAHDITRY
IIGIGKHFVSVQKQKTLHIFASEPVEEFVKILDTFEKLKDLFTDLQRRIYAIEGTNRQDLTSFNMELSSS
GISADLSKGHAVVGAVGAKDWAGGFLDLREDLQGATFVGQEPLTSDVRGGYLGYTVAWMTSRSSRPLLAA
GAPRYQHVGQVLLFQAPEAGGRWNQTQKIEGTQIGSYFGGELCSVDLDQDGEAELLLIGAPLFFGEQRGG
RVFTYQRRQSLFEMVSELQGDPGYPLGRFGAAITALTDINGDRLTDVAVGAPLEEQGAVYIFNGKPGGLS
PQPSQRIQGAQVFPGIRWFGRSIHGVKDLGGDRLADVVVGAEGRVVVLSSRPVVDVVTELSFSPEEIPVH
EVECSYSAREEQKHGVKLKACFRIKPLTPQFQGRLLANLSYTLQLDGHRMRSRGLFPDGSHELSGNTSIT
PDKSCLDFHFHFPICIQDLISPINVSLNFSLLEEEGTPRDQKVGRAMQPILRPSIHTVTKEIPFEKNCGE
DKKCEANLTLSSPARSGPLRLMSSASLAVEWTLSNSGEDAYWVRLDLDFPRGLSFRKVEMLQPHSRMPVS
CEELTEGSSLLTKTLKCNVSSPIFKAGQEVSLQVMFNTLLNSSWEDFVELNGTVHCENENSSLQEDNSAA
THIPVLYPVNILTKEQENSTLYISFTPKGPKTQQVQHVYQVRIQPSAYDHNMPTLEALVGVPWPHSEDPI
TYTWSVQTDPLVTCHSEDLKRPSSEAEQPCLPGVQFRCPIVFRREILIQVTGTVELSKEIKASSTLSLCS
SLSVSFNSSKHFHLYGSKASEAQVLVKVDLIHEKEMLHVYVLSGIGGLVLLFLIFLALYKVGFFKRNLKE
KMEADGGVPNGSPPEDTDPLAVPGEETKDMGCLEPLRESDKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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